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Fixing naming schemes for loci and sampleID (#29)
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Fix naming schemes for STR loci: always upper case, add spaces for PENTA E and PENTA D
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@rnmitchell
rnmitchell authored Jun 19, 2020
1 parent bf7e4b4 commit 787add6
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Showing 9 changed files with 191 additions and 186 deletions.
12 changes: 8 additions & 4 deletions lusSTR/annot.py
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Original file line number Diff line number Diff line change
Expand Up @@ -49,16 +49,20 @@ def main(args):
list_of_lists = []
flanks_list = []
for i, row in data.iterrows():
locus = data.iloc[i, 0]
locus = data.iloc[i, 0].upper()
reads = data.iloc[i, 1]
sequence = data.iloc[i, 2]
sampleid = data.iloc[i, 3]
sampleid = re.sub(" ", "_", data.iloc[i, 3])
try:
project = data.iloc[i, 4]
analysis = data.iloc[i, 5]
project = re.sub(" ", "_", data.iloc[i, 4])
analysis = re.sub(" ", "_", data.iloc[i, 5])
except IndexError:
project = 'NA'
analysis = 'NA'
if locus == 'PENTAD' or locus == 'PENTA_D':
locus = 'PENTA D'
if locus == 'PENTAE' or locus == 'PENTA_E':
locus = 'PENTA E'
metadata = str_marker_data[locus]
if (
len(sequence) <= (metadata['Foren_5'] + metadata['Foren_3']) and not args.uas
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4 changes: 2 additions & 2 deletions lusSTR/marker.py
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Original file line number Diff line number Diff line change
Expand Up @@ -154,7 +154,7 @@ def indel_flag(self):
def cannot_split(self):
return self.locus in [
'D19S433', 'D6S1043', 'TH01', 'D21S11', 'D1S1656', 'D7S820', 'D5S818', 'D12S391',
'D9S1122', 'PentaE'
'D9S1122', 'PENTA E'
]

@property
Expand Down Expand Up @@ -722,7 +722,7 @@ def STRMarkerObject(locus, sequence, uas=False, kit='forenseq'):
'D7S820': STRMarker_D7S820,
'D16S539': STRMarker_D16S539,
'D1S1656': STRMarker_D1S1656,
'PentaD': STRMarker_PentaD,
'PENTA D': STRMarker_PentaD,
'vWA': STRMarker_vWA,
'D10S1248': STRMarker_D10S1248,
'D22S1045': STRMarker_D22S1045,
Expand Down
6 changes: 3 additions & 3 deletions lusSTR/str_markers.json
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Original file line number Diff line number Diff line change
Expand Up @@ -427,7 +427,7 @@
"26", "26.2", "27"
]
},
"PentaD": {
"PENTA D": {
"BasesToSubtract": 5,
"NumRepeats": 1,
"Repeats": [
Expand All @@ -447,7 +447,7 @@
"14", "14.1", "15", "16", "17"
]
},
"PentaE": {
"PENTA E": {
"BasesToSubtract": 0,
"NumRepeats": 1,
"Repeats": [
Expand Down Expand Up @@ -501,7 +501,7 @@
"Power_3": 14,
"Alleles": ["5", "6", "7", "8", "9", "10", "11", "12", "13", "14"]
},
"vWA": {
"VWA": {
"BasesToSubtract": 8,
"NumRepeats": 3,
"Repeats": [
Expand Down
51 changes: 1 addition & 50 deletions lusSTR/tests/data/2800M_full_anno.txt
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50 changes: 50 additions & 0 deletions lusSTR/tests/data/2800M_full_anno_no_combined_reads.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,50 @@
SampleID Project Analysis Locus UAS_Output_Sequence Forward_Strand_Sequence Traditional_STR_Allele Forward_Strand_Bracketed_form UAS_Output_Bracketed_Form LUS LUS_Plus Reads
A01 NA NA CSF1PO AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT 12 [ATCT]12 [AGAT]12 12_12 12_12_0 100
A01 NA NA D10S1248 GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA 13 [GGAA]13 [GGAA]13 13_13 13_13 100
A01 NA NA D10S1248 GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA 15 [GGAA]15 [GGAA]15 15_15 15_15 100
A01 NA NA D12S391 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGAT AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGAT 18 [AGAT]11 [AGAC]6 AGAT [AGAT]11 [AGAC]6 AGAT 18_11 18_11_6_0 100
A01 NA NA D12S391 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGAC AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGAC 23 [AGAT]14 [AGAC]9 [AGAT]14 [AGAC]9 23_14 23_14_9_0 100
A01 NA NA D13S317 TATCTATCTATCTATCTATCTATCTATCTATCTATCAATCAATCATCTATCTATCTTTCTGTCTGTC TATCTATCTATCTATCTATCTATCTATCTATCTATCAATCAATCATCTATCTATCTTTCTGTCTGTC 9 [TATC]9 [AATC]2 [ATCT]3 TTCT GTCT GTC [TATC]9 [AATC]2 [ATCT]3 TTCT GTCT GTC 9_9 9_9_3_1 100
A01 NA NA D13S317 TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAATCATCTATCTATCTTTCTGTCTGTC TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAATCATCTATCTATCTTTCTGTCTGTC 11 [TATC]12 AATC [ATCT]3 TTCT GTCT GTC [TATC]12 AATC [ATCT]3 TTCT GTCT GTC 11_12 11_12_3_1 100
A01 NA NA D16S539 GATAGATAGATAGATAGATAGATAGATAGATAGATA GATAGATAGATAGATAGATAGATAGATAGATAGATA 9 [GATA]9 [GATA]9 9_9 9_9_0 100
A01 NA NA D16S539 GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA 13 [GATA]13 [GATA]13 13_13 13_13_0 100
A01 NA NA D17S1301 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT 11 [AGAT]11 [AGAT]11 11_11 11_11 100
A01 NA NA D17S1301 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT 12 [AGAT]12 [AGAT]12 12_12 12_12 100
A01 NA NA D18S51 AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAGAG AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAGAG 16 [AGAA]16 AAAG AGAG AG [AGAA]16 AAAG AGAG AG 16_16 16_16_1 100
A01 NA NA D18S51 AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAGAG AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAGAG 18 [AGAA]18 AAAG AGAG AG [AGAA]18 AAAG AGAG AG 18_18 18_18_1 100
A01 NA NA D19S433 AAGGAAAGAAGGTAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAGGAAGAAAGAGAG CTCTCTTTCTTCCTCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCTTTCCTT 13 CT CTCT TTCT TCCT CTCT [CCTT]11 CCTA CCTT CTTT CCTT AAGG AAAG AAGG TAGG [AAGG]11 AGAG AGGA AGAA AGAG AG 13_11 13_11_1_0 100
A01 NA NA D19S433 AAGGAAAGAAGGTAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAGGAAGAAAGAGAG CTCTCTTTCTTCCTCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCTTTCCTT 14 CT CTCT TTCT TCCT CTCT [CCTT]12 CCTA CCTT CTTT CCTT AAGG AAAG AAGG TAGG [AAGG]12 AGAG AGGA AGAA AGAG AG 14_12 14_12_1_0 100
A01 NA NA D1S1656 TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGTGTGTGTGTG CACACACACACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 12 CA [CACA]2 CCTA [TCTA]11 [TAGA]11 TAGG [TGTG]2 TG 12_11 12_11_1_0 100
A01 NA NA D1S1656 TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGTGTGTGTG CACACACACATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 13 CA [CACA]2 [TCTA]13 [TAGA]13 [TGTG]2 TG 13_13 13_13_0_0 100
A01 NA NA D20S482 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT 14 [AGAT]14 [AGAT]14 14_14 14_14 100
A01 NA NA D20S482 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT 15 [AGAT]15 [AGAT]15 15_15 15_15 100
A01 NA NA D21S11 TCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATATCTATCTATCTATCATCTATCTATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATATCTATCTATCTATCATCTATCTATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 29 [TCTA]4 [TCTG]6 [TCTA]3 TA [TCTA]3 TCA [TCTA]2 TCCATA [TCTA]11 [TCTA]4 [TCTG]6 [TCTA]3 TA [TCTA]3 TCA [TCTA]2 TCCATA [TCTA]11 29_11 29_11_4_6 100
A01 NA NA D21S11 TCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATATCTATCTATCTATCATCTATCTATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATCTA TCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATATCTATCTATCTATCATCTATCTATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATCTA 31.2 [TCTA]5 [TCTG]6 [TCTA]3 TA [TCTA]3 TCA [TCTA]2 TCCATA [TCTA]11 TA TCTA [TCTA]5 [TCTG]6 [TCTA]3 TA [TCTA]3 TCA [TCTA]2 TCCATA [TCTA]11 TA TCTA 31.2_11 31.2_11_5_6 100
A01 NA NA D22S1045 ATTATTATTATTATTATTATTATTATTATTATTATTATTACTATTATT ATTATTATTATTATTATTATTATTATTATTATTATTATTACTATTATT 16 [ATT]13 ACT [ATT]2 [ATT]13 ACT [ATT]2 16_13 16_13 100
A01 NA NA D2S1338 TGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGTCCTTCCTTCC GGAAGGAAGGACGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGCA 22 [GGAA]2 GGAC [GGAA]12 [GGCA]7 [TGCC]7 [TTCC]12 GTCC [TTCC]2 22_12 22_12_1_7 100
A01 NA NA D2S1338 TGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCGTCCTTCCTTCC GGAAGGAAGGACGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGCA 25 [GGAA]2 GGAC [GGAA]15 [GGCA]7 [TGCC]7 [TTCC]15 GTCC [TTCC]2 25_15 25_15_1_7 100
A01 NA NA D2S441 TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 10 [TCTA]10 [TCTA]10 10_10 10_10_0 100
A01 NA NA D2S441 TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTATCTA TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTATCTA 14 [TCTA]11 TTTA [TCTA]2 [TCTA]11 TTTA [TCTA]2 14_11 14_11_0 100
A01 NA NA D3S1358 TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 17 TCTA [TCTG]3 [TCTA]13 TCTA [TCTG]3 [TCTA]13 17_13 17_13_3 100
A01 NA NA D3S1358 TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 18 TCTA [TCTG]3 [TCTA]14 TCTA [TCTG]3 [TCTA]14 18_14 18_14_3 100
A01 NA NA D4S2408 ATCTATCTATCTATCTATCTATCTATCTATCTATCT ATCTATCTATCTATCTATCTATCTATCTATCTATCT 9 [ATCT]9 [ATCT]9 9_9 9_9_0 100
A01 NA NA D5S818 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAG CTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT 12 CTCT [ATCT]12 [AGAT]12 AGAG 12_12 12_12 100
A01 NA NA D6S1043 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT 12 [ATCT]12 [AGAT]12 12_12 12_12_0 100
A01 NA NA D6S1043 AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATAGATAGATAGATAGATAGAT ATCTATCTATCTATCTATCTATGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT 20 [ATCT]5 ATGT [ATCT]14 [AGAT]14 ACAT [AGAT]5 20_14 20_14_1 100
A01 NA NA D7S820 GATAGATAGATAGATAGATAGATAGATAGATAGACAGATTGATAGTTT AAACTATCAATCTGTCTATCTATCTATCTATCTATCTATCTATCTATC 8 AAAC TATC AATC TGTC [TATC]8 [GATA]8 GACA GATT GATA GTTT 8_8 8_8_1_0 100
A01 NA NA D7S820 GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGATTGATAGTTT AAACTATCAATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC 11 AAAC TATC AATC TGTC [TATC]11 [GATA]11 GACA GATT GATA GTTT 11_11 11_11_1_0 100
A01 NA NA D8S1179 TCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 14 TCTA TCTG [TCTA]12 TCTA TCTG [TCTA]12 14_12 14_12_1_0 100
A01 NA NA D8S1179 TCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA TCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA 15 [TCTA]2 TCTG [TCTA]12 [TCTA]2 TCTG [TCTA]12 15_12 15_12_1_0 100
A01 NA NA D9S1122 TAGATCGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA TAGATCGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA 12 TAGA TCGA [TAGA]10 TAGA TCGA [TAGA]10 12_10 12_10 100
A01 NA NA D9S1122 TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA 12 [TAGA]12 [TAGA]12 12_12 12_12 100
A01 NA NA FGA TTTCTTTCTTTCTTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCTTCCTTCC GGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGAAAGAAAGAAA 20 [GGAA]2 GGAG [AAAG]12 AGAA AAAA [GAAA]3 [TTTC]3 TTTT TTCT [CTTT]12 CTCC [TTCC]2 20_12 20_12_3_0 100
A01 NA NA FGA TTTCTTTCTTTCTTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCTTCCTTCC GGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGAAAGAAAGAAA 23 [GGAA]2 GGAG [AAAG]15 AGAA AAAA [GAAA]3 [TTTC]3 TTTT TTCT [CTTT]15 CTCC [TTCC]2 23_15 23_15_3_0 100
A01 NA NA PENTA D AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA 12 AAAAG [AAAGA]12 AAAAG [AAAGA]12 12_12 12_12 100
A01 NA NA PENTA D AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA 13 AAAAG [AAAGA]13 AAAAG [AAAGA]13 13_13 13_13 100
A01 NA NA PENTA E AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT 7 [TCTTT]7 [AAAGA]7 7_7 7_7 100
A01 NA NA PENTA E AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT 14 [TCTTT]14 [AAAGA]14 14_14 14_14 100
A01 NA NA TH01 AATGAATGAATGAATGAATGAATG AATGAATGAATGAATGAATGAATG 6 [AATG]6 [AATG]6 6_6 6_6 100
A01 NA NA TH01 AATGAATGAATGAATGAATGAATGATGAATGAATGAATG AATGAATGAATGAATGAATGAATGATGAATGAATGAATG 9.3 [AATG]6 ATG [AATG]3 [AATG]6 ATG [AATG]3 9.3_6 9.3_6 100
A01 NA NA TPOX AATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATG AATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATG 11 [AATG]11 [AATG]11 11_11 11_11 100
A01 NA NA VWA TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATAGA 16 TAGA TGGA [TAGA]12 [CAGA]3 TAGA TCTA [TCTG]3 [TCTA]12 TCCA TCTA 16_12 16_12_3_1 100
A01 NA NA VWA TCTATCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGATAGA 19 TAGA TGGA [TAGA]14 [CAGA]4 TAGA TCTA [TCTG]4 [TCTA]14 TCCA TCTA 19_14 19_14_4_1 100
12 changes: 6 additions & 6 deletions lusSTR/tests/data/2800M_uas_anno.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -39,12 +39,12 @@ A01 NA NA D9S1122 TAGATCGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA TAGATCGATAGAT
A01 NA NA D9S1122 TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA 12 [TAGA]12 [TAGA]12 12_12 12_12 100
A01 NA NA FGA TTTCTTTCTTTCTTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCTTCCTTCC GGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGAAAGAAAGAAA 20 [GGAA]2 GGAG [AAAG]12 AGAA AAAA [GAAA]3 [TTTC]3 TTTT TTCT [CTTT]12 CTCC [TTCC]2 20_12 20_12_3_0 100
A01 NA NA FGA TTTCTTTCTTTCTTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCTTCCTTCC GGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGAAAGAAAGAAA 23 [GGAA]2 GGAG [AAAG]15 AGAA AAAA [GAAA]3 [TTTC]3 TTTT TTCT [CTTT]15 CTCC [TTCC]2 23_15 23_15_3_0 100
A01 NA NA PentaD AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA 12 AAAAG [AAAGA]12 AAAAG [AAAGA]12 12_12 12_12 100
A01 NA NA PentaD AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA 13 AAAAG [AAAGA]13 AAAAG [AAAGA]13 13_13 13_13 100
A01 NA NA PentaE AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT 7 [TCTTT]7 [AAAGA]7 7_7 7_7 100
A01 NA NA PentaE AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT 14 [TCTTT]14 [AAAGA]14 14_14 14_14 100
A01 NA NA PENTA D AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA 12 AAAAG [AAAGA]12 AAAAG [AAAGA]12 12_12 12_12 100
A01 NA NA PENTA D AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA 13 AAAAG [AAAGA]13 AAAAG [AAAGA]13 13_13 13_13 100
A01 NA NA PENTA E AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT 7 [TCTTT]7 [AAAGA]7 7_7 7_7 100
A01 NA NA PENTA E AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT 14 [TCTTT]14 [AAAGA]14 14_14 14_14 100
A01 NA NA TH01 AATGAATGAATGAATGAATGAATG AATGAATGAATGAATGAATGAATG 6 [AATG]6 [AATG]6 6_6 6_6 100
A01 NA NA TH01 AATGAATGAATGAATGAATGAATGATGAATGAATGAATG AATGAATGAATGAATGAATGAATGATGAATGAATGAATG 9.3 [AATG]6 ATG [AATG]3 [AATG]6 ATG [AATG]3 9.3_6 9.3_6 100
A01 NA NA TPOX AATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATG AATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATG 11 [AATG]11 [AATG]11 11_11 11_11 100
A01 NA NA vWA TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATAGA 16 TAGA TGGA [TAGA]12 [CAGA]3 TAGA TCTA [TCTG]3 [TCTA]12 TCCA TCTA 16_12 16_12_3_1 100
A01 NA NA vWA TCTATCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGATAGA 19 TAGA TGGA [TAGA]14 [CAGA]4 TAGA TCTA [TCTG]4 [TCTA]14 TCCA TCTA 19_14 19_14_4_1 100
A01 NA NA VWA TCTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATAGA 16 TAGA TGGA [TAGA]12 [CAGA]3 TAGA TCTA [TCTG]3 [TCTA]12 TCCA TCTA 16_12 16_12_3_1 100
A01 NA NA VWA TCTATCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTA TAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGATAGA 19 TAGA TGGA [TAGA]14 [CAGA]4 TAGA TCTA [TCTG]4 [TCTA]14 TCCA TCTA 19_14 19_14_4_1 100
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