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fix: recover --docker-base-image feature #906

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merged 1 commit into from
Aug 9, 2023

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Yikun
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@Yikun Yikun commented Jul 25, 2023

In the #866 we introduced the --docker-base-image to help user to specify customized build docker image (such as Linux aarch64 build).

But we noticed that it doesn’t work after the #894 , because a local var introduced and the docker-base-image arguments is ignored.

This PR try to recover it, if user specify the --docker-base-image, it will be used directly otherwise use the local var.

Test:

[root@kunpeng bioconda-recipes]# bioconda-utils build --docker --packages bamstats --docker-base-image ghcr.io/yikun/bioconda-utils-build-env-cos7-aarch64

11:50:12 BIOCONDA INFO Considering total of 1 recipes (bamstats).
11:50:12 BIOCONDA INFO Processing 1 recipes (bamstats).
11:50:12 BIOCONDA WARNING Using tag 2.3.4 for docker image, since there is no image for a not yet release version (2.3.4+0.g9a85115.dirty).
11:50:12 BIOCONDA INFO Using docker image ghcr.io/yikun/bioconda-utils-build-env-cos7-aarch64 for building.
// ... ...

In the bioconda#866 we introduced the `--docker-base-image` to help user to specify customized build docker image (such as Linux aarch64 build).

But we noticed that it doesn’t work after the bioconda#894 , because a local var introduced and the `docker-base-image` arguments is ignored:
https://github.com/bioconda/bioconda-utils/blame/9a85115ae306f58c8b4e65e5f92f6cbdb5b68f04/bioconda_utils/cli.py#L468

This PR try to recover it, if user specify the `--docker-base-image`, it will be used directly otherwise use the local var.

Signed-off-by: Yikun Jiang <[email protected]>
@Yikun Yikun changed the title Recover --docker-base-image feature fix: Recover --docker-base-image feature Jul 25, 2023
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Yikun commented Jul 25, 2023

cc @johanneskoester @dpryan79

@Yikun Yikun changed the title fix: Recover --docker-base-image feature fix: recover --docker-base-image feature Aug 5, 2023
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Yikun commented Aug 5, 2023

All CI passed, ready for review

@johanneskoester johanneskoester merged commit aa08857 into bioconda:master Aug 9, 2023
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Yikun commented Aug 9, 2023

@johanneskoester Thanks!

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2 participants