Update TRTools to 6.1.0

[aryarm]

Closes #51983

Update trtools: 6.0.2 → 6.1.0

Please merge this PR instead of #51983. We've updated a dependency, added a dependency, and added an entrypoint.

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

The pull request introduces several changes to the meta.yaml file for the trtools package. The version of the package has been updated from 6.0.2 to 6.1.0, and the SHA256 checksum for the source tarball has been modified to match this new version. A new entry point named annotaTR has been added, which links to trtools.annotaTR:run.

Modifications in the requirements section include a downgrade of the minimum version constraint for the cyvcf2 dependency from >=0.30.4 to >=0.30.27, and the introduction of a new dependency, pgenlib, with a minimum version requirement of >=0.90.1.

In the test section, the imports list has been updated to include trtools.annotaTR, and the commands list now includes annotaTR --help, indicating that tests for the new functionality have been incorporated. Overall, the changes encompass version updates, new entry points, and adjustments to dependencies.

Suggested labels

autobump, new version

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 094474b and a01f63a.

📒 Files selected for processing (1)

• recipes/trtools/meta.yaml (7 hunks)

🔇 Additional comments (5)

recipes/trtools/meta.yaml (5)

23-23: LGTM: New entry point follows existing pattern.

The new annotaTR entry point is properly configured and follows the same pattern as other existing entry points in the package.

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36-36: Verify the cyvcf2 version downgrade.

The version constraint for cyvcf2 has been relaxed from >=0.30.4 to >=0.30.27. Please confirm:

1. Is this downgrade intentional?
2. Have you verified compatibility with older versions?
3. Are there any known issues in versions between 0.30.27 and 0.30.4?

The new dependency pgenlib >=0.90.1 looks good.

Also applies to: 46-46

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59-59: LGTM: Test coverage added for new functionality.

Appropriate test coverage has been added for the new annotaTR functionality, including both import and command-line tests.

Also applies to: 75-75

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2-2: Verify SHA256 checksum of the source tarball.

Let's ensure the SHA256 checksum matches the source tarball from PyPI.

Also applies to: 10-10

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93-95: Verify ARM platform compatibility.

The package is marked as noarch: python, but you've explicitly added ARM platforms. Please verify:

1. Are there any platform-specific dependencies that require special handling on ARM?
2. Have the dependencies been tested on ARM platforms?

#!/bin/bash
# Description: Check if dependencies have ARM platform support
# Look for platform-specific dependencies in requirements section

echo "Checking for platform-specific dependencies..."
rg "(?i)(arm|aarch64|platform|arch)" -A 5 -B 5

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[aryarm]

@BiocondaBot please add label

[aryarm]

Thanks for the review!

@BiocondaBot please merge

I don't think I have permission to merge myself, unfortunately