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LotuS2: Fix usearch path in lOTUs.cfg #51870

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merged 2 commits into from
Nov 2, 2024
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LotuS2: Fix usearch path in lOTUs.cfg #51870

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f11766f
Fix usearch path in lOTUs.cfg
nsoranzo Nov 1, 2024
59ac44f
Merge branch 'master' into lotus2_usearch
bgruening Nov 2, 2024
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4 changes: 2 additions & 2 deletions recipes/lotus2/build.sh
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
#!/bin/sh
SHARE_DIR=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM

rm -rf bin/installs/ bin/LCA bin/rtk bin/sdm bin/vsearch configs/sdm_src/
rm -rf bin/installs/ bin/lambda3* bin/LCA bin/rtk bin/sdm bin/vsearch
# Configure LotuS2
cp configs/LotuS.cfg.def lOTUs.cfg
for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm vsearch; do
for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm usearch vsearch; do
sed -i.bak -e "s|^$binary[[:space:]].*|$binary $PREFIX/bin/$binary|" lOTUs.cfg
done
for binary in cd-hit fasttree hmmsearch iqtree itsx makeBlastDB RDPjar; do
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2 changes: 1 addition & 1 deletion recipes/lotus2/meta.yaml
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Expand Up @@ -11,7 +11,7 @@ source:
sha256: {{ sha256 }}

build:
number: 0
number: 1
noarch: generic
run_exports:
- {{ pin_subpackage(name, max_pin='x') }}
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