-
Notifications
You must be signed in to change notification settings - Fork 3.3k
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Update Saccharis #51679
Merged
Merged
Update Saccharis #51679
Changes from all commits
Commits
Show all changes
63 commits
Select commit
Hold shift + click to select a range
cb93e7e
Add recipe for saccharis 2.0 dev18 build 1 to bioconda
AlexSCFraser f6f773d
updated to use git tag
AlexSCFraser e647f0b
Merge branch 'master' into saccharis
AlexSCFraser d37cc1b
updated to use a python package generated from setuptools build, with…
AlexSCFraser 25078ad
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser ae1285b
lowercased hash, since it's case-sensitive
AlexSCFraser a7ddfe6
added filename as "fn: saccharis-{{ version }}.tar.gz"
AlexSCFraser ebbdbc4
removed filename since bioconda considers it an error
AlexSCFraser 3e3a965
update url link
AlexSCFraser 4696ace
update sha256
AlexSCFraser e68ac62
remove unneeded comments
AlexSCFraser a5b62b4
remove tests which write files
AlexSCFraser f2ff867
remove tests which write files, with comment
AlexSCFraser 675e10e
Merge branch 'master' into saccharis
AlexSCFraser 9ce1b21
Merge branch 'saccharis' of https://github.com/saccharis/bioconda-rec…
AlexSCFraser 83b518b
add new release data to bioconda recipe
AlexSCFraser 93dc1ee
Merge branch 'master' into saccharis
AlexSCFraser 7e31b96
change build number to zero to satisfy bioconda linter
AlexSCFraser a383bb2
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser 68d2dec
Merge branch 'master' into saccharis
AlexSCFraser 9ab5ebd
add blast dependency
AlexSCFraser 12f9814
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser 678ec9e
Merge branch 'master' into saccharis
AlexSCFraser 84a1857
add run_exports breaking change behaviour
AlexSCFraser bc0d6d1
change name to lowercase in run_exports
AlexSCFraser d4eeb44
fix spacing
AlexSCFraser f59a507
nesting issue
AlexSCFraser 6d75ac2
remove nesting
AlexSCFraser df74506
fix version spacing
AlexSCFraser e6a01df
update to dev20
AlexSCFraser 25aba53
Merge branch 'master' into saccharis
AlexSCFraser 5ffd64f
update to dev20
AlexSCFraser 4c3934d
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser f234ecd
update to dev21
AlexSCFraser e534b01
Merge remote-tracking branch 'bioconda_origin/master' into saccharis
AlexSCFraser 4eb4056
fix >= sign
AlexSCFraser 4fb0457
increment build to fix small error
AlexSCFraser c63f725
Merge remote-tracking branch 'bioconda_origin/master' into saccharis
AlexSCFraser 76ca403
Merge branch 'master' into saccharis
AlexSCFraser 4e71a6e
update file hash and increment build
AlexSCFraser 6828344
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser ab4ef38
Merge remote-tracking branch 'bioconda_origin/master' into saccharis
AlexSCFraser 3e8ddf0
revert 2.0.1 to working dev21 build
AlexSCFraser b1dfdf8
upload 2.0.1 dev21 version with fixed database download
AlexSCFraser 688e910
Merge branch 'master' into saccharis
AlexSCFraser 68337c1
Merge branch 'master' into saccharis
AlexSCFraser e1f3d31
upload 2.0.1 dev21 version with another database download fix
AlexSCFraser 56121d0
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser df88bf4
Merge branch 'master' into saccharis
AlexSCFraser c57c8da
Merge branch 'master' into saccharis
AlexSCFraser ea9b2a3
increment build num
AlexSCFraser 31063c4
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser 331bc95
increment build num
AlexSCFraser 0ed7835
increment build num
AlexSCFraser a23dbf5
Merge branch 'master' into saccharis
AlexSCFraser 52e9f1b
update setuptools build requirements
AlexSCFraser cc77e98
update setuptools build requirements
AlexSCFraser e8bbcb9
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
AlexSCFraser 799a23c
update to build 3, which replaces wget with requests
AlexSCFraser 7d1d3c5
Merge remote-tracking branch 'origin/master' into saccharis
AlexSCFraser a8cf104
Merge branch 'master' into saccharis
AlexSCFraser a1c2b90
update hash
AlexSCFraser 32f9522
Merge remote-tracking branch 'origin/saccharis' into saccharis
AlexSCFraser File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
🛠️ Refactor suggestion
Use template variables in URL.
The URL hardcodes the version and build number. Consider using template variables for better maintainability: