Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update snakemake to 8.21.0 #51351

Merged
merged 1 commit into from
Oct 12, 2024
Merged

Update snakemake to 8.21.0 #51351

merged 1 commit into from
Oct 12, 2024

Conversation

BiocondaBot
Copy link
Collaborator

Update snakemake: 8.20.78.21.0

install with bioconda Conda

Info Link or Description
Recipe recipes/snakemake (click to view/edit other files)
Summary A popular workflow management system aiming at full in-silico reproducibility.
Home https://snakemake.github.io
Releases https://pypi.org/pypi/snakemake/json
Recipe Maintainer(s) @johanneskoester, @corneliusroemer

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 12, 2024
Copy link
Contributor

coderabbitai bot commented Oct 12, 2024

📝 Walkthrough

Walkthrough

This pull request updates the meta.yaml file for the Snakemake package. The primary change involves incrementing the package version from 8.20.7 to 8.21.0. Alongside this version update, the SHA256 checksum for the source tarball is modified from 9c8d75a4b270a31282d33170264a098698f055b8433c45610bfd364e5d6c5a91 to dcb30052645ab89facf680ef4ec021143eb5ef862bb2d2de2ec190a616c3c471. The requirements section indicates that the dependency snakemake-minimal is to match the newly specified version. The test commands included in the file remain unchanged, ensuring that the existing version check and import tests continue to operate as intended. The changes primarily focus on updating versioning and associated metadata without impacting the package's functionality or structure.

Possibly related PRs

  • Update snakemake to 8.20.6 #51219: This PR updates the snakemake package version from 8.20.5 to 8.20.6, which is directly related to the main PR that updates the version from 8.20.7 to 8.21.0.
  • Update snakemake to 8.20.7 #51327: This PR updates the snakemake package version from 8.20.6 to 8.20.7, which is also directly related to the main PR that updates the version to 8.21.0.

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 1732ce1 and 11d080f.

📒 Files selected for processing (1)
  • recipes/snakemake/meta.yaml (1 hunks)
🧰 Additional context used
🔇 Additional comments (3)
recipes/snakemake/meta.yaml (3)

4-4: Version update looks good.

The version has been correctly updated to 8.21.0, which aligns with the PR objective. This change is consistently reflected throughout the file, including in the run requirements for snakemake-minimal.


Line range hint 1-156: Overall changes look appropriate for a version bump.

The changes in this PR are minimal and appropriate for a version bump:

  1. The version has been updated to 8.21.0.
  2. The SHA256 checksum has been updated accordingly.
  3. The run requirements for snakemake-minimal automatically update to the new version.

No other changes were necessary, and none were made. The test commands and other metadata remain unchanged, which is correct for a minor version update.

🧰 Tools
🪛 yamllint

[error] 3-3: syntax error: found character '%' that cannot start any token

(syntax)


12-12: Verify the SHA256 checksum.

The SHA256 checksum has been updated to match the new version. It's crucial to ensure this checksum is correct for security reasons.

To verify the checksum, you can run the following script:


Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@bgruening bgruening merged commit 42ba68e into master Oct 12, 2024
7 checks passed
@bgruening bgruening deleted the bump/snakemake branch October 12, 2024 15:47
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
autobump Automatic Version Update new version
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants