Update merquryfk to 1.1.0

[BiocondaBot]

Update merquryfk: 1.0.0 → 1.1.0

Info	Link or Description
Recipe	recipes/merquryfk (click to view/edit other files)
Summary	MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
Home	https://github.com/thegenemyers/MERQURY.FK
Releases	https://github.com/thegenemyers/MERQURY.FK/tags
Author	@thegenemyers

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request introduces updates to the meta.yaml file for the MERQURYFK package. The version number has been incremented from "1.0.0" to "1.1.0". Correspondingly, the SHA256 checksum has been updated to "2af9dd265d10d79dceba495f8ef2469e5f832783b5824ab554e1efcb6ffe660c". Additionally, the build number has been modified from 1 to 0. All other elements within the meta.yaml file, including the package name, source URL, requirements, test commands, and the about section, remain unchanged. This update reflects standard versioning practices and ensures the integrity of the package through the updated checksum.

Possibly related PRs

• Update slow5tools to 1.3.0 #51048: Updates the meta.yaml file for the slow5tools package, including version and SHA256 checksum updates.
• Update metabolabpy to 0.9.53 #51094: Modifies the meta.yaml file for the metabolabpy package, featuring version and SHA256 checksum updates.
• Update peaks2utr to 1.3.3 #51170: Changes the meta.yaml file for the peaks2utr package, with updates to the version and SHA256 checksum.
• Update orthanq to 1.7.9 #51214: Updates the meta.yaml file for the orthanq package, including version and SHA256 checksum changes.
• Update kalamari to 5.7.1 #51225: Modifies the meta.yaml file for the kalamari package, reflecting version and SHA256 checksum updates.
• Update hybracter to 0.9.1 #51228: Updates the meta.yaml file for the hybracter package, including version and SHA256 checksum changes.
• Update mgnify-pipelines-toolkit to 0.1.7 #51237: Changes the meta.yaml file for the mgnify-pipelines-toolkit package, with updates to the version and SHA256 checksum.
• Update mgikit to 0.1.7 #51244: Updates the meta.yaml file for the mgikit package, including version and SHA256 checksum updates.
• Update querynator to 0.6.0 #51301: Modifies the meta.yaml file for the querynator package, featuring updates to the version and SHA256 checksum.
• Update pyfaidx to 0.8.1.3 #51304: Updates the meta.yaml file for the pyfaidx package, including version and SHA256 checksum changes.

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.

[coderabbitai]

Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)

recipes/merquryfk/meta.yaml (1)

Line range hint 1-54: Overall changes look good, but consider updating documentation.

The version update, SHA256 checksum change, and build number reset are all correct and consistent with the PR objectives. The url field will automatically use the new version, and the run_exports pinning strategy is appropriate for minor version updates.

However, given that this update introduces a significant change (replacing meryl with FastK for k-mer counting), it might be beneficial to update the package description or add a comment in the recipe to reflect this change.

Consider adding a comment or updating the about:summary field to mention the switch from meryl to FastK, for example:

about:
  license: https://github.com/thegenemyers/MERQURY.FK/blob/main/LICENSE
  summary: MerquryFK uses the FastK k-mer counter suite (replacing meryl) to considerably speed up analyses.
  home: https://github.com/thegenemyers/MERQURY.FK

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 9c75a49 and bff162f.

📒 Files selected for processing (1)

• recipes/merquryfk/meta.yaml (2 hunks)

🧰 Additional context used

🔇 Additional comments (3)

recipes/merquryfk/meta.yaml (3)

2-2: LGTM: Version update is correct.

The version has been correctly updated from 1.0.0 to 1.1.0, which aligns with the PR objectives and follows semantic versioning principles.

---

16-16: LGTM: Build number reset is correct.

The build number has been correctly reset to 0, which is standard practice when updating to a new version of the package.

---

3-3: Verify the SHA256 checksum.

The SHA256 checksum has been updated, which is necessary for the new version. However, it's crucial to ensure that this checksum corresponds to the correct source file for version 1.1.0.

Please run the following script to verify the checksum: