Update vclean to 0.2.1

[BiocondaBot]

Update vclean: 0.2.0 → 0.2.1

Info	Link or Description
Recipe	recipes/vclean (click to view/edit other files)
Summary	vClean: Assessing the contamination of viral genomes
Home	https://github.com/TsumaR/vclean
Releases	https://pypi.org/pypi/vclean/json
Recipe Maintainer(s)	@TsumaR

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request introduces modifications to the meta.yaml file for the vclean package. The primary change is the increment of the version number from 0.2.0 to 0.2.1. Alongside this version update, the SHA256 checksum for the source tarball has been revised from 690bffc90f7e2c200c503385e8288af503294c1005436e5f4ce97407c27e53bd to 17aa09563d96b7f06b4052fc73a764cb9959bf0bc1306bfe0c1a696b4a08088c. The remaining content of the meta.yaml file, including package metadata, source URL, build instructions, requirements, test commands, and additional information, has not been altered.

Possibly related PRs

• Update vclean to 0.2.0 #51193: This PR updates the vclean package from version 0.1.9 to 0.2.0, which is directly related to the main PR that updates vclean from 0.2.0 to 0.2.1. Both PRs involve changes to the same meta.yaml file and the versioning of the vclean package.
• Update vclean to 0.1.9 #51174: This PR updates the vclean package from version 0.1.5 to 0.1.9, which is also related as it involves changes to the same meta.yaml file for the vclean package, although it is an earlier version update compared to the main PR.

Suggested reviewers

• martin-g

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between d40c28b and f5d4105.

📒 Files selected for processing (1)

• recipes/vclean/meta.yaml (1 hunks)

🧰 Additional context used

🔇 Additional comments (3)

recipes/vclean/meta.yaml (3)

2-2: Version update looks good.

The version has been correctly updated from 0.2.0 to 0.2.1, which is consistent with the PR objectives. This change follows semantic versioning, indicating a patch update.

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10-10: Verify the updated SHA256 checksum.

The SHA256 checksum has been updated, which is necessary when the source package changes. However, we should verify that this new checksum is correct for version 0.2.1 of vclean.

To verify the checksum, you can run the following script:

#!/bin/bash
# Description: Verify the SHA256 checksum of the vclean 0.2.1 tarball

# Download the tarball
curl -sL https://pypi.io/packages/source/v/vclean/vclean-0.2.1.tar.gz -o vclean-0.2.1.tar.gz

# Calculate the SHA256 checksum
calculated_checksum=$(sha256sum vclean-0.2.1.tar.gz | awk '{print $1}')

# Compare with the checksum in the recipe
recipe_checksum="17aa09563d96b7f06b4052fc73a764cb9959bf0bc1306bfe0c1a696b4a08088c"

if [ "$calculated_checksum" = "$recipe_checksum" ]; then
    echo "Checksum verification passed."
else
    echo "Checksum verification failed."
    echo "Calculated: $calculated_checksum"
    echo "In recipe:  $recipe_checksum"
fi

# Clean up
rm vclean-0.2.1.tar.gz

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Line range hint 1-55: Consider if any other updates are necessary.

The changes for updating vclean to version 0.2.1 are minimal and focused, which is appropriate for a version bump. However, it's worth considering if any other parts of the recipe need to be updated. For example:

1. Are there any changes in dependencies for the new version?
2. Does the build number need to be reset to 0?
3. Are there any changes in the package's entry points or run exports?

It might be helpful to check the release notes or changelog for vclean 0.2.1 to ensure all necessary updates have been made to the recipe.

To check for any changes in the package metadata, you can run:

This will help identify any changes in Python version requirements or package dependencies.

✅ Verification successful

Shell script encountered an error. Please run the corrected script below to ensure accurate verification.

---

Version bump verified successfully. No additional updates are necessary.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Compare metadata of vclean 0.2.0 and 0.2.1

# Function to get package metadata
get_metadata() {
    version=$1
    curl -sL https://pypi.org/pypi/vclean/$version/json | jq '{
        requires_python: .info.requires_python,
        requires_dist: .info.requires_dist
    }'
}

echo "vclean 0.2.0 metadata:"
get_metadata 0.2.0

echo -e "\nvclean 0.2.1 metadata:"
get_metadata 0.2.1

Length of output: 940

---

Script:

#!/bin/bash
# Description: Compare metadata of vclean 0.2.0 and 0.2.1

# Function to get package metadata
get_metadata() {
    version=$1
    curl -sL "https://pypi.org/pypi/vclean/${version}/json" | jq '{
        requires_python: .info.requires_python,
        requires_dist: .info.requires_dist
    }'
}

echo "vclean 0.2.0 metadata:"
get_metadata "0.2.0"

echo -e "\nvclean 0.2.1 metadata:"
get_metadata "0.2.1"

Length of output: 845

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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