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Update bactopia-teton to 1.1.0 #51086

Merged
merged 2 commits into from
Oct 1, 2024
Merged

Update bactopia-teton to 1.1.0 #51086

merged 2 commits into from
Oct 1, 2024

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@BiocondaBot BiocondaBot commented Oct 1, 2024

Update bactopia-teton: 1.0.51.1.0

install with bioconda Conda

Info Link or Description
Recipe recipes/bactopia-teton (click to view/edit other files)
Summary Methods used by Bactopia for taxonomic classification
Home https://bactopia.github.io/
Releases https://github.com/bactopia/bactopia-teton/tags
Recipe Maintainer(s) @rpetit3
Author @bactopia

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 1, 2024
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coderabbitai bot commented Oct 1, 2024

📝 Walkthrough
📝 Walkthrough

Walkthrough

The pull request updates the bactopia-teton package by changing its version from "1.0.5" to "1.1.0". It modifies the source URL to link to the new version's tarball and updates the SHA256 checksum accordingly. The requirements section has been updated to change the version constraint for sizemeup from ">=1.0.2" to ">=1.2.2". Additionally, a new test command has been added. The overall structure of the meta.yaml file remains consistent with previous versions.

Changes

File Path Change Summary
recipes/bactopia-teton/meta.yaml - Version updated from "1.0.5" to "1.1.0"
- Source URL changed to point to v1.1.0
- SHA256 checksum updated to match new version
- Requirement for sizemeup updated from ">=1.0.2" to ">=1.2.2"
- New test command added: teton-prepare.py --help

Possibly related PRs

  • Update sizemeup to 1.1.0 #51055: This PR updates the sizemeup package from version 1.0.2 to 1.1.0, which is directly related to the main PR's change in the version constraint for sizemeup from >=1.0.2 to >=1.2.2.
  • Update sizemeup to 1.1.1 #51061: This PR updates the sizemeup package from version 1.1.0 to 1.1.1, which is relevant as it continues the version progression of the sizemeup package mentioned in the main PR.

Suggested reviewers

  • rpetit3

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 70c7c68 and a75aa41.

📒 Files selected for processing (1)
  • recipes/bactopia-teton/meta.yaml (3 hunks)
🧰 Additional context used
🪛 yamllint
recipes/bactopia-teton/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (4)
recipes/bactopia-teton/meta.yaml (4)

1-1: Version update looks good.

The package version has been correctly updated to 1.1.0, which aligns with the PR objectives.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


38-38: New test command added.

The addition of the "teton-prepare.py --help" test command is a good practice to ensure the functionality of the package.

Let's verify that this new command is actually available in the updated version:

#!/bin/bash
# Description: Check for the existence of teton-prepare.py in the package files.

# Test: Search for teton-prepare.py in the package files.
rg -l 'def main\(' $(fd -t f -e py teton-prepare.py)

31-31: Verify the updated sizemeup requirement.

The minimum required version of sizemeup has been increased from 1.0.2 to 1.2.2. This is a significant change that may impact compatibility.

Please confirm that this update is intentional and necessary for bactopia-teton 1.1.0. You may want to check the changelog or release notes for bactopia-teton 1.1.0 to verify this requirement change.


15-15: SHA256 checksum update looks good.

The SHA256 checksum has been updated, which is expected with a new version release.

Let's verify that the source URL has also been updated correctly:


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@rpetit3 rpetit3 merged commit 316fe78 into master Oct 1, 2024
7 checks passed
@rpetit3 rpetit3 deleted the bump/bactopia_teton branch October 1, 2024 22:21
This was referenced Nov 9, 2024
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