Update harpy to 1.8.2

[BiocondaBot]

Update harpy: 1.8.1 → 1.8.2

Info	Link or Description
Recipe	recipes/harpy (click to view/edit other files)
Summary	Process raw haplotagging data, from raw sequences to phased haplotypes.
Home	https://github.com/pdimens/harpy
Releases
Recipe Maintainer(s)	@pdimens
Author	@pdimens

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This pull request was automatically generated (see docs).

Summary by CodeRabbit

• New Features

  • Updated the harpy package to version 1.8.2, providing users with the latest enhancements and improvements.
  • Source URL for the package has been updated to ensure access to the new version's resources.

• Bug Fixes

  • Updated SHA256 checksum for improved integrity verification of the package download.

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the harpy package, changing the version from "1.8.1" to "1.8.2". It also updates the SHA256 checksum and modifies the source URL to reflect the new version's tarball. The build section remains mostly unchanged, and there are no alterations in the requirements, test commands, or the about section.

Changes

Files	Change Summary
recipes/harpy/meta.yaml	- Version updated from "1.8.1" to "1.8.2"
	- SHA256 updated from "e51ea8b7156..." to "b2459f6ed55..."
	- Source URL updated from "1.8.1" tarball to "1.8.2" tarball

Possibly related PRs

• Update peaks2utr to 1.3.2 #50979: Updates the version, SHA256 checksum, and source URL in the meta.yaml file for the harpy package.
• Update straglr to 1.5.2 #51000: Similar updates to the version, SHA256 checksum, and source URL in the meta.yaml file.
• Update gempipe to 1.35.3 #51008: Updates the version, SHA256 checksum, and source URL in the meta.yaml file for the gempipe package.
• Update yahs to 1.2.1 #51013: Updates the version, SHA256 checksum, and source URL in the meta.yaml file, paralleling the main PR.
• Update nanovar to 1.8.1 #51032: Aligns with the changes in the main PR by updating the version, SHA256 checksum, and source URL.
• Update olivar to 1.2.1 #51060: Reflects similar changes to the version and SHA256 checksum in the meta.yaml file.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between a9a2602 and 6eeae23.

📒 Files selected for processing (1)

• recipes/harpy/meta.yaml (1 hunks)

🧰 Additional context used

🪛 yamllint

recipes/harpy/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (3)

recipes/harpy/meta.yaml (3)

1-2: LGTM: Version and checksum updated correctly.

The version has been updated from 1.8.1 to 1.8.2, and the SHA256 checksum has been updated accordingly. These changes are consistent with the PR objectives for updating the harpy package.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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Line range hint 13-80: Overall changes look good.

The only changes in this update are the version number and the corresponding SHA256 checksum. All other sections (build, requirements, test commands, and about) remain unchanged, which is consistent with a straightforward version bump from 1.8.1 to 1.8.2.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

Line range hint 10-11: Verify the source URL.

The source URL has been updated to use the new version number. This change is consistent with the version update.

Let's verify that the new URL is accessible:

✅ Verification successful

Source URL Verification Successful

The updated source URL https://github.com/pdimens/harpy/releases/download/1.8.2/harpy.1.8.2.tar.gz is accessible and correctly reflects the new version number.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the new source URL is accessible

# Extract the version from the YAML file
version=$(grep 'version =' recipes/harpy/meta.yaml | awk -F'"' '{print $2}')

# Construct the URL
url="https://github.com/pdimens/harpy/releases/download/${version}/harpy.${version}.tar.gz"

# Check if the URL is accessible
if curl --output /dev/null --silent --head --fail "$url"; then
  echo "URL is accessible: $url"
else
  echo "Error: URL is not accessible: $url"
  exit 1
fi

Length of output: 491

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

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