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Build raxml for osx-arm64 #49098

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merged 8 commits into from
Jul 11, 2024
Merged

Build raxml for osx-arm64 #49098

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3290761
Build raxml for osx-arm64
corneliusroemer Jul 10, 2024
48ba847
Disable failing arm64 builds
corneliusroemer Jul 10, 2024
62891a7
f
corneliusroemer Jul 10, 2024
afafb7c
Apply patch to not overwrite CC env variable
corneliusroemer Jul 10, 2024
3bf8943
try again, with better patch
corneliusroemer Jul 10, 2024
4eee658
fix: thanks @martin-g
corneliusroemer Jul 11, 2024
53508de
Delete recipes/raxml/patch
corneliusroemer Jul 11, 2024
f10ff37
Update meta.yaml
corneliusroemer Jul 11, 2024
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23 changes: 16 additions & 7 deletions recipes/raxml/build.sh
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Original file line number Diff line number Diff line change
@@ -1,19 +1,28 @@
#!/bin/bash

case `uname` in
Darwin) SUF=.mac;;
Linux) SUF=.gcc;;
*) echo "Unknown architecture"; exit 1;;
set -exo pipefail

case $(uname) in
Darwin) SUF=.mac ;;
Linux) SUF=.gcc ;;
*)
echo "Unknown architecture"
exit 1
;;
esac

ARCH=$(uname -m)

mkdir -p $PREFIX/bin
mkdir -p "$PREFIX"/bin

for PTHREADS in "" .PTHREADS; do
for OPT in "" .SSE3 .AVX2; do

if [ "${ARCH}" == "aarch64" -a "${OPT}" == ".AVX2" ]; then
if [[ "${ARCH}" == "aarch64" && "${OPT}" == ".AVX2" ]]; then
continue
fi

if [[ ${ARCH} == "arm64" && ("${OPT}" == ".AVX2" || "${OPT}" == ".SSE3" || "${PTHREADS}" == ".PTHREADS") ]]; then
continue
fi

Expand All @@ -25,7 +34,7 @@ for PTHREADS in "" .PTHREADS; do
MAKEFILE=${MAKEFILE}.gcc
fi
make -f ${MAKEFILE} CC=$CC
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mv raxmlHPC* $PREFIX/bin
mv raxmlHPC* "$PREFIX"/bin
make -f ${MAKEFILE} clean
done
done
13 changes: 7 additions & 6 deletions recipes/raxml/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ package:
version: "8.2.13"

build:
number: 1
number: 2
run_exports:
- {{ pin_subpackage('raxml', max_pin="x") }}

Expand All @@ -19,11 +19,11 @@ requirements:
test:
commands:
- raxmlHPC -h > /dev/null
- raxmlHPC-PTHREADS -h > /dev/null
- raxmlHPC-SSE3 -h > /dev/null
- raxmlHPC-PTHREADS-SSE3 -h > /dev/null
- 'raxmlHPC-AVX2 -h > /dev/null' # [not aarch64]
- 'raxmlHPC-PTHREADS-AVX2 -h > /dev/null' # [not aarch64]
- raxmlHPC-PTHREADS -h > /dev/null # [not arm64]
- raxmlHPC-SSE3 -h > /dev/null # [not arm64]
- raxmlHPC-PTHREADS-SSE3 -h > /dev/null # [not arm64]
- 'raxmlHPC-AVX2 -h > /dev/null' # [not (aarch64 or arm64)]
- 'raxmlHPC-PTHREADS-AVX2 -h > /dev/null' # [not (aarch64 or arm64)]

about:
home: http://sco.h-its.org/exelixis/web/software/raxml/index.html
Expand All @@ -33,6 +33,7 @@ about:
extra:
additional-platforms:
- linux-aarch64
- osx-arm64
identifiers:
- biotools:raxml
- doi:10.1093/bioinformatics/btu033
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