Build raxml for osx-arm64

[corneliusroemer]

No description provided.

[corneliusroemer]

@martin-g I noticed you upstreamed some changes to raxml to add aarch64 support. Maybe you could do likewise here? I'm using a patch for now as I don't understand the details of the necessary changes, but would be cool if you could have a look at whether we might build with pthreads etc for arm64 as well.

[corneliusroemer]

@BiocondaBot please add label

[corneliusroemer]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Package(s) built are ready for inspection:

Arch	Package	Zip File / Repodata	CI	Instructions
linux-64	raxml-8.2.13-h031d066_2.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64	raxml-8.2.13-h8af04d4_2.tar.bz2	OSXArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-arm64	raxml-8.2.13-h8316a8f_2.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/76c910a2-9eb2-4a26-9a1c-32bb41a4e4f4/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	raxml-8.2.13-h8a409c4_2.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/d0f7dd04-8e44-4c17-9c2f-3f84e36fe2c9/artifacts/0/tmp/artifacts/packages <package name>

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Docker image(s) built:

Package	Tag	CI	Install with docker
raxml	8.2.13--h031d066_2	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/raxml:8.2.13--h031d066_2.tar.gz | docker load

[corneliusroemer]

Ah this is a great point! I don't quite remember, maybe I was trying to debug locally and didn't have the CC env variable set. I don't know very much about make yet. Thanks for your eyes!

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On Thu, Jul 11, 2024, 09:16 Martin Grigorov ***@***.***> wrote: ***@***.**** commented on this pull request. ------------------------------ In recipes/raxml/build.sh <#49098 (comment)> : > @@ -24,8 +33,8 @@ for PTHREADS in "" .PTHREADS; do else MAKEFILE=${MAKEFILE}.gcc fi - make -f ${MAKEFILE} CC=$CC Why did you remove CC=$CC ? I think this is the reason why now you need the patch (to remove CC = gcc. — Reply to this email directly, view it on GitHub <#49098 (review)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AF77AQK6HEJDYVLU57QZ36LZLYWM3AVCNFSM6AAAAABKVUIQOGVHI2DSMVQWIX3LMV43YUDVNRWFEZLROVSXG5CSMV3GSZLXHMZDCNZRGEYDINBSGQ> . You are receiving this because you authored the thread.Message ID: ***@***.***>