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Update pangolin to 4.3.1 #42192

Merged
merged 11 commits into from
Nov 5, 2024
16 changes: 8 additions & 8 deletions recipes/pangolin/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,15 +1,15 @@
{% set version = "4.3" %}
{% set version = "4.3.1" %}

package:
name: pangolin
version: {{ version }}

source:
url: https://github.com/cov-lineages/pangolin/archive/refs/tags/v{{ version }}.tar.gz
sha256: daf13c111799943b05bc2c8eee8deb2316e1347ca8f40f0b40d22cdbcc72e3c1
sha256: 79f958cfc1b3a01144b138b9ca34ab010aa4ec72499a29ea41acaa57b0bfe7c0

build:
number: 2
number: 0
noarch: python
script: python -m pip install --no-deps --ignore-installed .

Expand All @@ -19,23 +19,23 @@ requirements:
- pip
run:
- python >=3.7
- biopython ==1.74
- biopython >=1.74
- pandas >=1.0.1
- tabulate
- joblib >=0.11
- scikit-learn <1.3.0
- scikit-learn >=0.23.1
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- pulp >=2
- minimap2 >=2.16
- snakemake-minimal >=5.13,<=7.30.1
- snakemake-minimal >=5.13,!=7.30.1
- gofasta
- usher >=0.6.2
- usher >=0.5.4
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see cov-lineages/pangolin#500 for why usher is pinned to >=0.6.2

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- ucsc-fatovcf >=426
- git
- git-lfs
- scorpio >=0.3.12
- constellations >=0.0.15
- pangolin-data >=1.2.133.2
- conda
- wheel >=0.34
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test:
commands:
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