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genbank: add aarch64/arm64 builds #51448

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merged 1 commit into from
Oct 17, 2024
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Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
@martin-g martin-g added aarch64 Related to adding linux-aarch64 support osx-arm64 Related to adding osx-arm64 support labels Oct 17, 2024
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📝 Walkthrough

Walkthrough

The pull request introduces modifications to the meta.yaml file for the genbank package. Key changes include an update to the build number from 0 to 1, indicating a new build version. The previous skip attribute, which prevented builds for Python versions less than 3.6, has been removed. The source URL has been corrected to ensure it points to the appropriate package version. Additionally, a new extra section has been added to specify additional-platforms, which now includes linux-aarch64 and osx-arm64. Furthermore, the indentation for the license, license_family, and license_file fields under the about section has been adjusted to ensure proper alignment.

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please review & merge


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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
recipes/genbank/meta.yaml (1)

38-41: LGTM: Additional platforms added as intended.

The addition of 'linux-aarch64' and 'osx-arm64' to the 'additional-platforms' section directly addresses the PR objective of adding aarch64/arm64 builds. This change will enable the package to be built for ARM-based systems, which is excellent for expanding platform support.

Consider adjusting the indentation for better readability:

extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 45f417f and 58e125e.

📒 Files selected for processing (1)
  • recipes/genbank/meta.yaml (2 hunks)
🧰 Additional context used
🔇 Additional comments (3)
recipes/genbank/meta.yaml (3)

13-13: LGTM: Build number increment is appropriate.

Incrementing the build number from 0 to 1 is correct when introducing changes to the package build process without changing the package version. This change aligns with the PR objective of adding aarch64/arm64 builds.


12-14: Verify intention: Removal of Python version skip condition.

The skip condition skip: True # [py < 36] has been removed. This allows the package to be built for Python versions below 3.6. Please confirm if this is intentional and if the package is now compatible with earlier Python versions.

Could you provide more context on why this condition was removed? Are there any compatibility concerns with earlier Python versions?


Line range hint 1-41: Overall review: Changes align with PR objectives, one clarification needed.

The changes to this file generally align well with the PR objective of adding aarch64/arm64 builds. The build number increment and addition of extra platforms are appropriate and well-implemented.

However, there's one point that requires clarification:

  1. The removal of the skip condition for Python versions below 3.6 is not explicitly mentioned in the PR objectives. Please confirm if this change is intentional and if there are any compatibility concerns with earlier Python versions.

Once this point is clarified, the changes look good to merge.

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@BiocondaBot please fetch artifacts

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Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 genbank-0.118-py310h7c593f9_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 genbank-0.118-py311hdad781d_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 genbank-0.118-py312hf67a6ed_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 genbank-0.118-py38h0020b31_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 genbank-0.118-py39hff71179_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64 genbank-0.118-py310h341b679_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 genbank-0.118-py311hb338bc1_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 genbank-0.118-py312h68c8633_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 genbank-0.118-py38h51c4a30_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 genbank-0.118-py39h1841df5_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-arm64 genbank-0.118-py310h6c82c4b_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/571479ad-5be6-4e38-88ce-a81cc7dbbeed/artifacts/0/tmp/artifacts/packages <package name>
osx-arm64 genbank-0.118-py311he5efcd3_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/571479ad-5be6-4e38-88ce-a81cc7dbbeed/artifacts/0/tmp/artifacts/packages <package name>
osx-arm64 genbank-0.118-py312hffe8590_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/571479ad-5be6-4e38-88ce-a81cc7dbbeed/artifacts/0/tmp/artifacts/packages <package name>
osx-arm64 genbank-0.118-py38h24147e2_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/571479ad-5be6-4e38-88ce-a81cc7dbbeed/artifacts/0/tmp/artifacts/packages <package name>
osx-arm64 genbank-0.118-py39hc375725_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/571479ad-5be6-4e38-88ce-a81cc7dbbeed/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 genbank-0.118-py310h8c4ab44_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8819ddf-2892-41e2-9a73-54511167f2f1/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 genbank-0.118-py311h9d58220_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8819ddf-2892-41e2-9a73-54511167f2f1/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 genbank-0.118-py312hcf8b9e2_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8819ddf-2892-41e2-9a73-54511167f2f1/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 genbank-0.118-py38h7763450_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8819ddf-2892-41e2-9a73-54511167f2f1/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 genbank-0.118-py39hf354171_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8819ddf-2892-41e2-9a73-54511167f2f1/artifacts/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag CI Install with docker
genbank 0.118--py310h7c593f9_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/genbank:0.118--py310h7c593f9_1.tar.gz | docker load
genbank 0.118--py311hdad781d_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/genbank:0.118--py311hdad781d_1.tar.gz | docker load
genbank 0.118--py312hf67a6ed_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/genbank:0.118--py312hf67a6ed_1.tar.gz | docker load
genbank 0.118--py38h0020b31_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/genbank:0.118--py38h0020b31_1.tar.gz | docker load
genbank 0.118--py39hff71179_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/genbank:0.118--py39hff71179_1.tar.gz | docker load

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mgrigorov in 🌐 euler-arm-22 in /tmp/genbank via 🅒 test123 took 3s 
❯ tar xvf genbank-0.118-py310h8c4ab44_1.tar.bz2                                                                                                                                                            (test123) 
info/run_exports.json
info/test/run_test.py
info/hash_input.json
info/has_prefix
info/index.json
info/recipe/meta.yaml.template
info/files
info/recipe/meta.yaml
info/paths.json
info/recipe/conda_build_config.yaml
info/about.json
info/licenses/LICENSE
info/git
lib/python3.10/site-packages/genbank/meta.py
lib/python3.10/site-packages/genbank/sequence.py
lib/python3.10/site-packages/genbank/translate.py
lib/python3.10/site-packages/genbank/codons.py
lib/python3.10/site-packages/genbank/file.py
lib/python3.10/site-packages/genbank/feature.py
bin/genbank.py
lib/python3.10/site-packages/genbank/locus.py
lib/python3.10/site-packages/genbank/__init__.py
lib/python3.10/site-packages/genbank/__pycache__/__init__.cpython-310.pyc
lib/python3.10/site-packages/genbank/__pycache__/sequence.cpython-310.pyc
lib/python3.10/site-packages/genbank/__pycache__/codons.cpython-310.pyc
lib/python3.10/site-packages/genbank/__pycache__/translate.cpython-310.pyc
lib/python3.10/site-packages/genbank/__pycache__/file.cpython-310.pyc
lib/python3.10/site-packages/genbank/__pycache__/feature.cpython-310.pyc
lib/python3.10/site-packages/genbank/__pycache__/locus.cpython-310.pyc
lib/python3.10/site-packages/genbank-0.118.dist-info/direct_url.json
lib/python3.10/site-packages/genbank-0.118.dist-info/top_level.txt
lib/python3.10/site-packages/genbank-0.118.dist-info/INSTALLER
lib/python3.10/site-packages/genbank-0.118.dist-info/WHEEL
lib/python3.10/site-packages/genbank-0.118.dist-info/RECORD
lib/python3.10/site-packages/genbank-0.118.dist-info/METADATA
lib/python3.10/site-packages/genbank-0.118.dist-info/LICENSE
lib/python3.10/site-packages/genbank-0.118.dist-info/REQUESTED

mgrigorov in 🌐 euler-arm-22 in /tmp/genbank via 🅒 test123 
❯ find ./ -name "*.so"                          

LGTM!

There are no CPU architecture specific libraries ...

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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Oct 17, 2024
@rpetit3 rpetit3 merged commit b072084 into bioconda:master Oct 17, 2024
7 checks passed
@coderabbitai coderabbitai bot mentioned this pull request Oct 17, 2024
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