Merge branch 'master' into bedgraphtobigwig

bioconda · Oct 29, 2024 · a473406 · a473406
2 parents 6af0b18 + 3dadfe4
commit a473406
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Showing 5 changed files with 20 additions and 14 deletions.
diff --git a/recipes/flippyr/meta.yaml b/recipes/flippyr/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "flippyr" %}
-{% set version = "0.5.3" %}
-{% set sha256 = "2d7354138bc77a63242369c440175de39ca2dc414a8ef3a506b0abe7e9473a35" %}
+{% set version = "0.6.0" %}
+{% set sha256 = "e39da37ecdafe399429213d98761610a93f1bdb1906256a0ea4868bd6271f366" %}
 
 package:
   name: {{ name|lower }}
@@ -14,7 +14,7 @@ requirements:
   build:
     - python
     - setuptools
-
+    - pip
   run:
     - python
     - pyfaidx
@@ -23,9 +23,11 @@ requirements:
 build:
   number: 0
   noarch: python
-  script: "{{ PYTHON }} setup.py install --single-version-externally-managed --record=record.txt"
+  script: "{{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir"
   entry_points:
     - flippyr = flippyr:main
+  run_exports:
+    - {{ pin_subpackage('flippyr', max_pin="x.x") }}
 
 test:
   commands:

diff --git a/recipes/kaptive/meta.yaml b/recipes/kaptive/meta.yaml
@@ -1,13 +1,13 @@
 {% set name = "kaptive" %}
-{% set version = "3.0.0b5" %}
+{% set version = "3.0.0b6" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/kaptive-{{ version }}.tar.gz
-  sha256: d1462db66b22b6c9f42922df6ba05526cb08a453e311e6da2704603e60cb84c3
+  sha256: 7144b5bea531a5c5e8022a5898e16d24b0705ebedefedb4470bf5a5864225ae8
 
 build:
   entry_points:
@@ -22,6 +22,7 @@ requirements:
   host:
     - python >=3.9
     - pip
+    - setuptools
   run:
     - python >=3.9
     - biopython >=1.83

diff --git a/recipes/quota_anchor/build.sh b/recipes/quota_anchor/build.sh
@@ -1,5 +1,6 @@
 #!/bin/bash
-$PYTHON -m pip install --no-deps --ignore-installed . -vv
+
+$PYTHON -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv
 echo "[software]
 gffread = ${PREFIX}/bin/gffread
 AnchorWave = ${PREFIX}/bin/anchorwave

diff --git a/recipes/quota_anchor/meta.yaml b/recipes/quota_anchor/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "quota_anchor" %}
-{% set version = "0.0.1a0" %}
-{% set sha256 = "01d8520825fee67f8c73803d3bbe7855291592c064cd2d5712d02e104a71a8fa" %}
+{% set version = "0.0.1a1" %}
+{% set sha256 = "b6eb3ba82a32a8a5e238615dac6ef0eeef5de0d584643132b903dcddb94e760d" %}
 
 package:
   name: {{ name }}
@@ -19,7 +19,8 @@ build:
 requirements:
   host:
     - python >=3
-    - pip 
+    - pip
+    - setuptools
   run:
     - python >=3
     - gffread
@@ -33,18 +34,19 @@ requirements:
     - pal2nal
     - paml
     - plotnine
-    - seaborn
+    - seaborn-base
     - pandas
     - numpy
-
+    - alive-progress
 
 test:
   commands:
-    - 'quota_Anchor 2>&1 | grep "usage: quota_Anchor"'
+    - 'quota_Anchor -h'
 
 about:
   home: https://github.com/baoxingsong/quota_Anchor
   license: MIT
+  license_family: MIT
   summary: 'Strand and WGD aware syntenic gene identification'
   description: "Strand and WGD aware syntenic gene identification for comparative genomics"
   dev_url: https://github.com/baoxingsong/quota_Anchor
diff --git a/recipes/ucsc-wigtobigwig/meta.yaml b/recipes/ucsc-wigtobigwig/meta.yaml
@@ -15,7 +15,7 @@ source:
     - include.macos.patch  # [osx]
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage(package, max_pin=None) }}