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[ci skip] Merge PR 19771
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Merge PR #19771, commits were: 
 * readd test
 * Remove tests and update version num
 * add csv_xs package
 * add perl-text-csv
 * Add perl-file-sharedir-install
 * Add noarch
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into perl-metabolomics-fragment-annotation-0.2.0
 * Init perl-metabolomics-fragment-annotation with its version 0.2.
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes

# By Bioconda Bot (464) and others
# Via Devon Ryan
* 'master' of https://github.com/bioconda/bioconda-recipes: (2408 commits)
  Update pyega3 to 3.0.39 (#17007)
  Remove 5 packages from the blacklist (#17004)
  Update validators to 0.14.0 (#17002)
  Update epic2 to 0.0.39 (#17003)
  Update r-seurat to 3.1.0 (#17001)
  Update bbknn to 1.3.5 (#15908)
  Update sra-tools to 2.10.0 (#16998)
  Add Unified Variant Analysis Pipeline (UVP) for M. tuberculosis analysis
  Update bbmap to 38.63 (#16999)
  Update ncbi-vdb to 2.10.0 (#16997)
  add r-immunedeconv (#16103)
  Update rgt to 0.12.2 (#16981)
  python-chado 2.3.0 (#16995)
  build spades from source (#16937)
  Update n50 to 0.83 (#16994)
  Update picard-slim to 2.20.6 (#16993)
  Update picard to 2.20.6 (#16992)
  bcftools polysomy (#16989)
  Update fastq-scan to 0.4.0 (#16991)
  Add Logomaker (#16990)
  ...
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes

# By Devon Ryan (31) and others
# Via GitHub
* 'master' of https://github.com/bioconda/bioconda-recipes: (353 commits)
  pysradb: update to 0.8.0 (#13815)
  Update: r-basejump to 0.9.11 for bcbiornaseq compat (#13805)
  we lost the dexseq_count script (#13806)
  Amptk (#13809)
  rebuild amptk (#13802)
  Sparc: add utilities (#13804)
  update wgbs snakepipes tools (#13793)
  Rebuild exonerate (#13686)
  Update Picard to 2.18.27. (#13795)
  Update to official release, add patch (#13791)
  Add PylProtPredictor (#13790)
  Update cgpbigwig to 1.0.3 (#13258)
  Update treetime to 0.5.3 (#13249)
  added shapeshifter-cli recipe (#13667)
  Update post-link.sh (#13767)
  v0.1.6 February 2019 Release (#13789)
  Add notes regarding binary name (#13762)
  update maaslin to version 0.0.5 (#13788)
  Gromacs 2018.6 patch (#13787)
  Use khronos opencl on osx (#13786)
  ...
 * Merge branch 'perl-http-simple-fixing'

* perl-http-simple-fixing:
  Add new test and dependancies
 * Add new test and dependancies
  • Loading branch information
fgiacomoni authored and BiocondaBot committed Jan 21, 2020
1 parent e483ebd commit 629f2fd
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25 changes: 25 additions & 0 deletions recipes/perl-metabolomics-fragment-annotation/build.sh
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#!/bin/bash

# If it has Build.PL use that, otherwise use Makefile.PL
if [ -f Build.PL ]; then
perl Build.PL
./Build
./Build test
# Make sure this goes in site
./Build install --installdirs site
elif [ -f Makefile.PL ]; then
# Make sure this goes in site
perl Makefile.PL INSTALLDIRS=site
make
make test
make install
else
echo 'Unable to find Build.PL or Makefile.PL. You need to modify build.sh.'
exit 1
fi

# Add more build steps here, if they are necessary.

# See
# http://docs.continuum.io/conda/build.html
# for a list of environment variables that are set during the build process.
39 changes: 39 additions & 0 deletions recipes/perl-metabolomics-fragment-annotation/meta.yaml
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package:
name: perl-metabolomics-fragment-annotation
version: "0.2"

source:
url: https://cpan.metacpan.org/authors/id/G/GI/GIACOMONI/Metabolomics-Fragment-Annotation-0.2.tar.gz
md5: 2644f210af0b26371b879851010afc33

build:
number: 0
noarch: generic
# skip: True # [osx] <<<<<<<<

requirements:
host:
- perl
- perl-file-share
- perl-text-csv
- perl-text-csv_xs
- perl-xml-twig
- perl-file-sharedir-install

run:
- perl
- perl-file-share
- perl-text-csv
- perl-text-csv_xs
- perl-xml-twig
- perl-file-sharedir-install

test:
# Perl 'use' tests
imports:
- Metabolomics::Fragment::Annotation

about:
home: https://metacpan.org/pod/Metabolomics::Fragment::Annotation
license: perl_5
summary: 'Perl extension for fragment annotation in metabolomics'

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