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22 Open 2 Closed
22 Open 2 Closed
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Issues list

enable seasnap-de with simple count table as input
#30 opened Nov 28, 2023 by bobermayer
seasnap-mapping does not run for some in path configurations
#29 opened Nov 17, 2023 by january3
1
Changes in sample_info 'stranded' field to not trigger rerun of STAR mapping
#27 opened Sep 20, 2023 by Nicolai-vKuegelgen
1
DE html report bug
#26 opened Jul 28, 2023 by AndranikIvanov
2
adapter trimming
#24 opened Jul 4, 2023 by AndranikIvanov
Support for 3' tagged RNA-seq
#23 opened Mar 23, 2023 by ericblanc20
Fail to install - channel priority issue
#20 opened Nov 29, 2022 by eudesbarbosa
1
Add support for better adapter trimming, umis & udis
#19 opened Oct 7, 2022 by ericblanc20
Outdated installation instruction
#17 opened Jul 20, 2022 by ErikaZ95
single cell pipeline fails at rule all due to problem with "csv-table" and snakemake version
#16 opened Apr 4, 2022 by mmilek
3
mapping pipeline fails at infer experiment rule due to missing pysam libraries
#15 opened Apr 1, 2022 by mmilek
Replace DRMAA
#13 opened Mar 23, 2022 by messersc
Overhaul software management
#12 opened Mar 23, 2022 by messersc
1
--config file_name="..." doesn't work if DE_config.yaml and covariate_file.txt are not present
#11 opened Dec 16, 2021 by january3
1
Star breaks down with new installation
#10 opened Dec 14, 2021 by AndranikIvanov
@january3
1
Standardise code: imports and style
#8 opened Jun 14, 2021 by eudesbarbosa
Add issue template
#7 opened Jun 11, 2021 by eudesbarbosa
Move R code away from snakemake files
#6 opened Jun 4, 2021 by eudesbarbosa
@january3
Clean up branches help wanted Extra attention is needed
#5 opened Jun 4, 2021 by eudesbarbosa
12 tasks
@january3 @bobermayer
@ericblanc20 @AndranikIvanov
Version info storage
#4 opened May 31, 2021 by eudesbarbosa
Slow conda installation
#3 opened May 31, 2021 by eudesbarbosa
1
Expand git ignore list
#2 opened May 31, 2021 by eudesbarbosa
ProTip! Exclude everything labeled bug with -label:bug.