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[WIP] Use specificaiton schemas to generate regex. #1126

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[WIP] Use specificaiton schemas to generate regex. #1126

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db22e4a
add schemas directory, direct copy from spec repo yml files
rwblair Aug 31, 2020
c09cb18
Merge branch 'master' of github.com:bids-standard/bids-validator into…
rwblair Dec 8, 2020
0c44644
copy over latest schemas from spec
rwblair Dec 8, 2020
7a649ba
copy over latest schema files from spec and update index.js to match …
rwblair Feb 2, 2021
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1 change: 1 addition & 0 deletions bids-validator/package.json
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Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,7 @@
"hed-validator": "^2.0.1",
"ignore": "^4.0.2",
"is-utf8": "^0.2.1",
"js-yaml": "^3.14.0",
"jshint": "^2.9.6",
"lerna": "^3.15.0",
"minimatch": "3.0.4",
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9 changes: 9 additions & 0 deletions bids-validator/schemas/associated_data.yaml
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@@ -0,0 +1,9 @@
---
- code/:
- required: false
- derivatives/:
- required: false
- sourcedata/:
- required: false
- stimuli/:
- required: false
16 changes: 16 additions & 0 deletions bids-validator/schemas/auxdatatypes/channels.yaml
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---
- datatypes:
- meg
- eeg
- ieeg
suffixes:
- channels
extensions:
- .json
- .tsv
entities:
sub: required
ses: optional
task: required
acq: optional
run: optional
14 changes: 14 additions & 0 deletions bids-validator/schemas/auxdatatypes/electrodes.yaml
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---
- datatypes:
- eeg
- ieeg
suffixes:
- electrodes
extensions:
- .json
- .tsv
entities:
sub: required
ses: optional
acq: optional
space: optional
16 changes: 16 additions & 0 deletions bids-validator/schemas/auxdatatypes/events.yaml
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---
- datatypes:
- meg
- eeg
- ieeg
suffixes:
- events
extensions:
- .json
- .tsv
entities:
sub: required
ses: optional
task: required
acq: optional
run: optional
13 changes: 13 additions & 0 deletions bids-validator/schemas/auxdatatypes/photo.yaml
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@@ -0,0 +1,13 @@
---
- datatypes:
- meg
- eeg
- ieeg
suffixes:
- photo
extensions:
- .jpg
entities:
sub: required
ses: optional
acq: optional
173 changes: 173 additions & 0 deletions bids-validator/schemas/datatypes/anat.yaml
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---
# First group
- suffixes:
- T1w
- T2w
- PDw
- T2starw
- FLAIR
- inplaneT1
- inplaneT2
- PDT2
- angio
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
part: optional
# Second group
- suffixes:
- T1map
- T2map
- T2starmap
- R1map
- R2map
- R2starmap
- PDmap
- MTRmap
- MTsat
- UNIT1
- T1rho
- MWFmap
- MTVmap
- PDT2map
- Chimap
- TB1map
- RB1map
- S0map
- M0map
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
# Third group
- suffixes:
- defacemask
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
modality: optional
# Fourth group
- suffixes:
- MESE
- MEGRE
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
echo: required
part: optional
# Fifth group
- suffixes:
- VFA
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
flip: required
part: optional
# Sixth group
- suffixes:
- IRT1
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
inversion: required
part: optional
# Seventh group
- suffixes:
- MP2RAGE
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
echo: optional
flip: required
inversion: required
part: optional
# Eighth group
- suffixes:
- MPM
- MTS
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
echo: optional
flip: required
mtransfer: required
part: optional
# Nineth group
- suffixes:
- MTR
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
run: optional
acquisition: optional
ceagent: optional
reconstruction: optional
mtransfer: required
part: optional
28 changes: 28 additions & 0 deletions bids-validator/schemas/datatypes/beh.yaml
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---
# First group
- suffixes:
- stim
- physio
extensions:
- .tsv.gz
- .json
entities:
subject: required
session: optional
task: required
acquisition: optional
run: optional
recording: optional
# Second group
- suffixes:
- events
- beh
extensions:
- .tsv
- .json
entities:
subject: required
session: optional
task: required
acquisition: optional
run: optional
31 changes: 31 additions & 0 deletions bids-validator/schemas/datatypes/dwi.yaml
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---
# First group
- suffixes:
- dwi
extensions:
- .nii.gz
- .nii
- .json
- .bvec
- .bval
entities:
subject: required
session: optional
acquisition: optional
direction: optional
run: optional
part: optional
# Second group
- suffixes:
- sbref
extensions:
- .nii.gz
- .nii
- .json
entities:
subject: required
session: optional
acquisition: optional
direction: optional
run: optional
part: optional
66 changes: 66 additions & 0 deletions bids-validator/schemas/datatypes/eeg.yaml
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---
- suffixes:
- eeg
extensions:
- .json
- .edf
- .vhdr
- .vmrk
- .eeg
- .set
- .fdt
- .bdf
entities:
subject: required
session: optional
task: required
acquisition: optional
run: optional
- suffixes:
- channels
extensions:
- .json
- .tsv
entities:
subject: required
session: optional
task: required
acquisition: optional
run: optional
- suffixes:
- coordsystem
extensions:
- .json
entities:
subject: required
session: optional
acquisition: optional
- suffixes:
- electrodes
extensions:
- .json
- .tsv
entities:
subject: required
session: optional
acquisition: optional
space: optional
- suffixes:
- events
extensions:
- .json
- .tsv
entities:
subject: required
session: optional
task: required
acquisition: optional
run: optional
- suffixes:
- photo
extensions:
- .jpg
entities:
subject: required
session: optional
acquisition: optional
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