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We always want to use some flags in development; e.g. an empty glob is a sign of a mistake, so we always want --incompatible_disallow_empty_glob
We will unconditionally set such flags in .bazelrc (not just in CI config).
For other incompatible flags (--incompatible_enable_proto_toolchain_resolution), we want to test builds both with and without them - and with bzlmod both enabled and disabled (see discussion in #236 for a case where this matters).
Such flags we will group under --config=incompatible, and test all 4 combinations (+- incompatible +- bzlmod) in CI.