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Spark: Read DVs when reading from .position_deletes table #11657

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Original file line number Diff line number Diff line change
@@ -0,0 +1,158 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/
package org.apache.iceberg.spark.source;

import java.io.IOException;
import java.nio.ByteBuffer;
import java.util.Collections;
import java.util.Iterator;
import java.util.List;
import java.util.Objects;
import org.apache.iceberg.DeleteFile;
import org.apache.iceberg.MetadataColumns;
import org.apache.iceberg.PartitionSpec;
import org.apache.iceberg.Schema;
import org.apache.iceberg.deletes.PositionDeleteIndex;
import org.apache.iceberg.io.CloseableGroup;
import org.apache.iceberg.io.CloseableIterable;
import org.apache.iceberg.io.CloseableIterator;
import org.apache.iceberg.io.InputFile;
import org.apache.iceberg.puffin.BlobMetadata;
import org.apache.iceberg.puffin.Puffin;
import org.apache.iceberg.puffin.PuffinReader;
import org.apache.iceberg.relocated.com.google.common.collect.ImmutableList;
import org.apache.iceberg.relocated.com.google.common.collect.Iterables;
import org.apache.iceberg.relocated.com.google.common.collect.Lists;
import org.apache.iceberg.util.Pair;
import org.apache.spark.sql.catalyst.InternalRow;
import org.apache.spark.sql.catalyst.expressions.GenericInternalRow;
import org.apache.spark.unsafe.types.UTF8String;

class DVIterable extends CloseableGroup implements CloseableIterable<InternalRow> {
private final Puffin.ReadBuilder builder;
private final PartitionSpec spec;
private final DeleteFile deleteFile;
private final Schema projection;

DVIterable(InputFile inputFile, DeleteFile deleteFile, PartitionSpec spec, Schema projection) {
this.deleteFile = deleteFile;
this.builder = Puffin.read(inputFile);
this.spec = spec;
this.projection = projection;
}

@Override
public CloseableIterator<InternalRow> iterator() {
PuffinReader reader = builder.build();
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[optional] might be too much, but can we have one reader per DV file ? considering specifically for this use case we will have to read all the blobs in the DV file eventually.

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do you have a particular use case in mind as this isn't something that is being needed currently when reading the PositionDeletesTable?

addCloseable(reader);
return new DVIterator(reader);
}

private class DVIterator implements CloseableIterator<InternalRow> {
private final PuffinReader reader;
private Iterator<Long> positions = Collections.emptyIterator();
private List<Object> rowValues;
private Integer deletedPositionIndex;

DVIterator(PuffinReader reader) {
this.reader = reader;
try {
reader.fileMetadata().blobs().stream()
.filter(
blob ->
// read the correct blob for the referenced data file
Objects.equals(
deleteFile.referencedDataFile(),
blob.properties().get("referenced-data-file")))
.findFirst()
.ifPresent(
blob -> {
// there should only be a single element
Pair<BlobMetadata, ByteBuffer> current =
Iterables.getOnlyElement(reader.readAll(ImmutableList.of(blob)));
List<Long> pos = Lists.newArrayList();
PositionDeleteIndex.deserialize(current.second().array(), deleteFile)
.forEach(pos::add);
this.positions = pos.iterator();
});
} catch (IOException e) {
throw new RuntimeException(e);
}
}

@Override
public boolean hasNext() {
return positions.hasNext();
}

@Override
public InternalRow next() {
long position = positions.next();

if (null == rowValues) {
this.rowValues = Lists.newArrayList();
if (null != projection.findField(MetadataColumns.DELETE_FILE_PATH.fieldId())) {
rowValues.add(UTF8String.fromString(deleteFile.referencedDataFile()));
}

if (null != projection.findField(MetadataColumns.DELETE_FILE_POS.fieldId())) {
rowValues.add(position);
// remember the index where the deleted position needs to be set
deletedPositionIndex = rowValues.size() - 1;
}

if (null != projection.findField(MetadataColumns.DELETE_FILE_ROW_FIELD_ID)) {
// there's no info about deleted rows with DVs, so always return null
rowValues.add(null);
}

if (null != projection.findField(MetadataColumns.PARTITION_COLUMN_ID)) {
StructInternalRow partition = new StructInternalRow(spec.partitionType());
partition.setStruct(deleteFile.partition());
rowValues.add(partition);
}

if (null != projection.findField(MetadataColumns.SPEC_ID_COLUMN_ID)) {
rowValues.add(deleteFile.specId());
}

if (null != projection.findField(MetadataColumns.FILE_PATH_COLUMN_ID)) {
rowValues.add(UTF8String.fromString(deleteFile.location()));
}
} else if (null != deletedPositionIndex) {
// only update the deleted position if necessary, everything else stays the same
rowValues.set(deletedPositionIndex, position);
}
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return new GenericInternalRow(rowValues.toArray());
}

@Override
public void remove() {
throw new UnsupportedOperationException("Remove is not supported");
}

@Override
public void close() throws IOException {
if (null != reader) {
reader.close();
}
}
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,7 @@
import org.apache.iceberg.io.InputFile;
import org.apache.iceberg.relocated.com.google.common.base.Preconditions;
import org.apache.iceberg.relocated.com.google.common.primitives.Ints;
import org.apache.iceberg.util.ContentFileUtil;
import org.apache.iceberg.util.SnapshotUtil;
import org.apache.spark.rdd.InputFileBlockHolder;
import org.apache.spark.sql.catalyst.InternalRow;
Expand Down Expand Up @@ -90,6 +91,10 @@ protected CloseableIterator<InternalRow> open(PositionDeletesScanTask task) {
ExpressionUtil.extractByIdInclusive(
task.residual(), expectedSchema(), caseSensitive(), Ints.toArray(nonConstantFieldIds));

if (ContentFileUtil.isDV(task.file())) {
return new DVIterable(inputFile, task.file(), task.spec(), expectedSchema()).iterator();
}

return newIterable(
inputFile,
task.file().format(),
Expand Down
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