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HBASE-23693 Split failure may cause region hole and data loss when use zk assign #1071

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merged 1 commit into from
Feb 10, 2020

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thangTang
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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 28s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+0 🆗 mvndep 1m 22s Maven dependency ordering for branch
+1 💚 mvninstall 7m 41s branch-1 passed
+1 💚 compile 1m 7s branch-1 passed with JDK v1.8.0_242
+1 💚 compile 1m 11s branch-1 passed with JDK v1.7.0_252
+1 💚 checkstyle 2m 27s branch-1 passed
+1 💚 shadedjars 3m 15s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 55s branch-1 passed with JDK v1.8.0_242
+1 💚 javadoc 1m 9s branch-1 passed with JDK v1.7.0_252
+0 🆗 spotbugs 2m 54s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 4m 24s branch-1 passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 15s Maven dependency ordering for patch
+1 💚 mvninstall 2m 6s the patch passed
+1 💚 compile 1m 1s the patch passed with JDK v1.8.0_242
+1 💚 javac 1m 1s the patch passed
+1 💚 compile 1m 11s the patch passed with JDK v1.7.0_252
+1 💚 javac 1m 11s the patch passed
-1 ❌ checkstyle 1m 43s hbase-server: The patch generated 1 new + 18 unchanged - 0 fixed = 19 total (was 18)
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 shadedjars 3m 6s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 5m 21s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 51s the patch passed with JDK v1.8.0_242
+1 💚 javadoc 1m 10s the patch passed with JDK v1.7.0_252
-1 ❌ findbugs 1m 40s hbase-client generated 2 new + 0 unchanged - 0 fixed = 2 total (was 0)
_ Other Tests _
+1 💚 unit 2m 38s hbase-client in the patch passed.
-1 ❌ unit 151m 52s hbase-server in the patch failed.
+1 💚 asflicense 0m 46s The patch does not generate ASF License warnings.
206m 37s
Reason Tests
FindBugs module:hbase-client
Dead store to t in org.apache.hadoop.hbase.MetaTableAccessor.getDaughterRegionsFromParent(Connection, HRegionInfo) At MetaTableAccessor.java:org.apache.hadoop.hbase.MetaTableAccessor.getDaughterRegionsFromParent(Connection, HRegionInfo) At MetaTableAccessor.java:[line 852]
Dead store to t in org.apache.hadoop.hbase.MetaTableAccessor.getHRegionInfo(Connection, byte[]) At MetaTableAccessor.java:org.apache.hadoop.hbase.MetaTableAccessor.getHRegionInfo(Connection, byte[]) At MetaTableAccessor.java:[line 845]
Failed junit tests hadoop.hbase.replication.TestReplicationKillSlaveRS
hadoop.hbase.master.TestMasterOperationsForRegionReplicas
Subsystem Report/Notes
Docker Client=19.03.5 Server=19.03.5 base: https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/1/artifact/out/Dockerfile
GITHUB PR #1071
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux baa1866f84de 4.15.0-74-generic #84-Ubuntu SMP Thu Dec 19 08:06:28 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality /home/jenkins/jenkins-slave/workspace/Base-PreCommit-GitHub-PR_PR-1071/out/precommit/personality/provided.sh
git revision branch-1 / 64b9d2f
Default Java 1.7.0_252
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:1.8.0_242 /usr/lib/jvm/zulu-7-amd64:1.7.0_252
checkstyle https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/1/artifact/out/diff-checkstyle-hbase-server.txt
findbugs https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/1/artifact/out/new-findbugs-hbase-client.html
unit https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/1/artifact/out/patch-unit-hbase-server.txt
Test Results https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/1/testReport/
Max. process+thread count 3950 (vs. ulimit of 10000)
modules C: hbase-client hbase-server U: .
Console output https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/1/console
versions git=1.9.1 maven=3.0.5 findbugs=3.0.1
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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 1m 28s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+0 🆗 mvndep 1m 21s Maven dependency ordering for branch
+1 💚 mvninstall 7m 33s branch-1 passed
+1 💚 compile 1m 1s branch-1 passed with JDK v1.8.0_242
+1 💚 compile 1m 12s branch-1 passed with JDK v1.7.0_252
+1 💚 checkstyle 2m 24s branch-1 passed
+1 💚 shadedjars 3m 14s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 58s branch-1 passed with JDK v1.8.0_242
+1 💚 javadoc 1m 8s branch-1 passed with JDK v1.7.0_252
+0 🆗 spotbugs 2m 57s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 4m 29s branch-1 passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 15s Maven dependency ordering for patch
+1 💚 mvninstall 2m 10s the patch passed
+1 💚 compile 1m 0s the patch passed with JDK v1.8.0_242
+1 💚 javac 1m 0s the patch passed
+1 💚 compile 1m 11s the patch passed with JDK v1.7.0_252
+1 💚 javac 1m 11s the patch passed
-1 ❌ checkstyle 0m 38s hbase-client: The patch generated 1 new + 79 unchanged - 0 fixed = 80 total (was 79)
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 shadedjars 3m 9s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 5m 16s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 51s the patch passed with JDK v1.8.0_242
+1 💚 javadoc 1m 8s the patch passed with JDK v1.7.0_252
+1 💚 findbugs 4m 43s the patch passed
_ Other Tests _
+1 💚 unit 2m 37s hbase-client in the patch passed.
+1 💚 unit 152m 18s hbase-server in the patch passed.
+1 💚 asflicense 0m 45s The patch does not generate ASF License warnings.
206m 25s
Subsystem Report/Notes
Docker Client=19.03.5 Server=19.03.5 base: https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/2/artifact/out/Dockerfile
GITHUB PR #1071
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux 514f8208f1d5 4.15.0-74-generic #84-Ubuntu SMP Thu Dec 19 08:06:28 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality /home/jenkins/jenkins-slave/workspace/Base-PreCommit-GitHub-PR_PR-1071/out/precommit/personality/provided.sh
git revision branch-1 / 99a59cf
Default Java 1.7.0_252
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:1.8.0_242 /usr/lib/jvm/zulu-7-amd64:1.7.0_252
checkstyle https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/2/artifact/out/diff-checkstyle-hbase-client.txt
Test Results https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/2/testReport/
Max. process+thread count 3931 (vs. ulimit of 10000)
modules C: hbase-client hbase-server U: .
Console output https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/2/console
versions git=1.9.1 maven=3.0.5 findbugs=3.0.1
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This seems to solve the main issue, which is the parent and its interim daughters been wiped off. However, I'm wondering if the problem happens because we are setting parent state offline and split=true too soon in the split operation. What would you think, @thangTang ?

Also, is it possible to provide a UT to reproduce? Might be too complex, though, since it involves some sort of race condition.

Comment on lines +767 to +780
PairOfSameType<HRegionInfo> daughterRegions =
MetaTableAccessor.getDaughterRegionsFromParent(this.server.getConnection(), region);
if (daughterRegions != null) {
if (daughterRegions.getFirst() != null) {
daughter2Parent.put(daughterRegions.getFirst().getEncodedName(), region);
}
if (daughterRegions.getSecond() != null) {
daughter2Parent.put(daughterRegions.getSecond().getEncodedName(), region);
}
}
} catch (KeeperException ke) {
server.abort("Unexpected ZK exception deleting node " + region, ke);
} catch (IOException e) {
LOG.warn("get daughter from meta exception " + region, e);
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Is it really entering this block? My understanding is that parent region would be in OFFLINE state and SPLIT=true after createDaughters call completed inside SplitTransactionImpl.execute.

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Yes, but at this time(after createDaughters call completed inside SplitTransactionImpl.execute) the split transaction is still not entirely complete.

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Yes, but at this time(after createDaughters call completed inside SplitTransactionImpl.execute) the split transaction is still not entirely complete.

And that's why seems wrong to have SPLIT=true already at that point.

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If we update the meta information later, we can only put it after the completion of execute openDaughters. It is not very clear to me what impact this might have now. I may need more detailed and comprehensive thinking. My idea is to merge this patch first, at least it can solve most of the problems. Do you think it is okay? @wchevreuil

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If we update the meta information later, we can only put it after the completion of execute openDaughters.

Yeah, that's what I think.

It is not very clear to me what impact this might have now. I may need more detailed and comprehensive thinking. My idea is to merge this patch first, at least it can solve most of the problems. Do you think it is okay?

If you think it's too much work try fixing the state/split flag updates on this PR, then yeah, we can merge this one for now, then work on the other solution in a different jira/RP.

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If you think it's too much work try fixing the state/split flag updates on this PR, then yeah, we can merge this one for now, then work on the other solution in a different jira/RP.

Yeah, I hope to merge this patch first, and other work can be completed in new JIRA. At least it can solve the problem of data loss. In extreme scenarios, the region hole can be temporarily repaired by HBCK.

HRegionInfo parent = daughter2Parent.get(hri.getEncodedName());
HRegionInfo info = getHRIFromMeta(parent);
if (info != null && info.isSplit() && info.isOffline()) {
regionsToClean.add(Pair.newPair(state.getRegion(), info));
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Oh, so parent is OFFLINE and SPLIT=true in meta only, but not in assignedRegions? Sounds wrong that we marked parent as OFFLINE and SPLIT even when splitting was still not entirely complete.

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If the RS machine crash when the SplitTransactionImpl step after PONR, master will handle the split rollback. Under normal conditions, it cleanup daughter region and try to assign parent region. If assign failed, parent region RIT so CatalogJanitor blocked; but at this time the master switch, new master will delete parent region because of OFFLINE and SPLIT=true.

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This daughter2Parent added stingency makes sense to me. Nice.

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If the RS machine crash when the SplitTransactionImpl step after PONR, master will handle the split rollback.

Yeah, but it seems to work only because Master has different info for the region than what is actual in meta. What if Active Master also crashes before it triggers SCP and daughters get cleaned up? The other master will load regions state as seen in meta, then it can run into same problem again.

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If the RS machine crash when the SplitTransactionImpl step after PONR, master will handle the split rollback.

Yeah, but it seems to work only because Master has different info for the region than what is actual in meta. What if Active Master also crashes before it triggers SCP and daughters get cleaned up? The other master will load regions state as seen in meta, then it can run into same problem again.

daughter cleanup is excuted in SCP, and in this patch it will do three things together:

  1. delete daughter region in meta
  2. update parent region in meta
  3. delete daughter region dir in HDFS
	  if (regionPair != null) {
            MetaTableAccessor.deleteRegion(this.server.getConnection(), hri);	            MetaTableAccessor.deleteRegion(this.server.getConnection(), hri);
          }	          }
          if (parentInfo != null) {
            List<Mutation> mutations = new ArrayList<Mutation>();
            HRegionInfo copyOfParent = new HRegionInfo(parentInfo);
            copyOfParent.setOffline(false);
            copyOfParent.setSplit(false);
            Put putParent = MetaTableAccessor.makePutFromRegionInfo(copyOfParent);
            mutations.add(putParent);
            MetaTableAccessor.mutateMetaTable(this.server.getConnection(), mutations);
          }
          LOG.debug("Cleaning up HDFS since no meta entry exists, hri: " + hri);	          LOG.debug("Cleaning up HDFS since no meta entry exists, hri: " + hri);
          FSUtils.deleteRegionDir(server.getConfiguration(), hri);	          FSUtils.deleteRegionDir(server.getConfiguration(), hri);

So if Active Master also crashes before it triggers SCP, the daughter won`t be deleted.

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So if Active Master also crashes before it triggers SCP, the daughter won`t be deleted.

Yes, that's my point. We would now have a new active master that sees parent split as complete, although split was midway through. It will potentially remove the parent, and fail to online the daughters.

I wonder if working on correcting the regions state and split flag updates would sort split failures at different scenarios. It also does not seem consistent the way we do these updates in meta only and don't reflect it on the "in-memory" region info master has.

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💔 -1 overall

Vote Subsystem Runtime Comment
+0 🆗 reexec 22m 10s Docker mode activated.
_ Prechecks _
+1 💚 dupname 0m 0s No case conflicting files found.
+1 💚 hbaseanti 0m 0s Patch does not have any anti-patterns.
+1 💚 @author 0m 0s The patch does not contain any @author tags.
-0 ⚠️ test4tests 0m 0s The patch doesn't appear to include any new or modified tests. Please justify why no new tests are needed for this patch. Also please list what manual steps were performed to verify this patch.
_ branch-1 Compile Tests _
+0 🆗 mvndep 1m 25s Maven dependency ordering for branch
+1 💚 mvninstall 7m 34s branch-1 passed
+1 💚 compile 1m 1s branch-1 passed with JDK v1.8.0_242
+1 💚 compile 1m 11s branch-1 passed with JDK v1.7.0_252
+1 💚 checkstyle 2m 5s branch-1 passed
+1 💚 shadedjars 2m 59s branch has no errors when building our shaded downstream artifacts.
+1 💚 javadoc 0m 56s branch-1 passed with JDK v1.8.0_242
+1 💚 javadoc 1m 8s branch-1 passed with JDK v1.7.0_252
+0 🆗 spotbugs 2m 40s Used deprecated FindBugs config; considering switching to SpotBugs.
+1 💚 findbugs 4m 4s branch-1 passed
_ Patch Compile Tests _
+0 🆗 mvndep 0m 17s Maven dependency ordering for patch
+1 💚 mvninstall 1m 58s the patch passed
+1 💚 compile 1m 0s the patch passed with JDK v1.8.0_242
+1 💚 javac 1m 0s the patch passed
+1 💚 compile 1m 8s the patch passed with JDK v1.7.0_252
+1 💚 javac 1m 8s the patch passed
+1 💚 checkstyle 2m 2s the patch passed
+1 💚 whitespace 0m 0s The patch has no whitespace issues.
+1 💚 shadedjars 2m 49s patch has no errors when building our shaded downstream artifacts.
+1 💚 hadoopcheck 4m 51s Patch does not cause any errors with Hadoop 2.8.5 2.9.2.
+1 💚 javadoc 0m 52s the patch passed with JDK v1.8.0_242
+1 💚 javadoc 1m 8s the patch passed with JDK v1.7.0_252
+1 💚 findbugs 4m 23s the patch passed
_ Other Tests _
+1 💚 unit 2m 42s hbase-client in the patch passed.
-1 ❌ unit 148m 43s hbase-server in the patch failed.
+1 💚 asflicense 0m 57s The patch does not generate ASF License warnings.
221m 19s
Reason Tests
Failed junit tests hadoop.hbase.client.TestRestoreSnapshotFromClient
Subsystem Report/Notes
Docker Client=19.03.5 Server=19.03.5 base: https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/3/artifact/out/Dockerfile
GITHUB PR #1071
Optional Tests dupname asflicense javac javadoc unit spotbugs findbugs shadedjars hadoopcheck hbaseanti checkstyle compile
uname Linux d918b4e4f0ab 4.15.0-60-generic #67-Ubuntu SMP Thu Aug 22 16:55:30 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Build tool maven
Personality /home/jenkins/jenkins-slave/workspace/Base-PreCommit-GitHub-PR_PR-1071/out/precommit/personality/provided.sh
git revision branch-1 / 99a59cf
Default Java 1.7.0_252
Multi-JDK versions /usr/lib/jvm/zulu-8-amd64:1.8.0_242 /usr/lib/jvm/zulu-7-amd64:1.7.0_252
unit https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/3/artifact/out/patch-unit-hbase-server.txt
Test Results https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/3/testReport/
Max. process+thread count 4229 (vs. ulimit of 10000)
modules C: hbase-client hbase-server U: .
Console output https://builds.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-1071/3/console
versions git=1.9.1 maven=3.0.5 findbugs=3.0.1
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This seems to solve the main issue, which is the parent and its interim daughters been wiped off. However, I'm wondering if the problem happens because we are setting parent state offline and split=true too soon in the split operation. What would you think, @thangTang ?

Also, is it possible to provide a UT to reproduce? Might be too complex, though, since it involves some sort of race condition.

I think the direct reason for this problem is that the information in the meta table has not been updated after the daughter region is cleaned up. At this time, the sub daughter no longer exists and the master will also try to reassign the parent region, so updating the information in the meta table should not have a negative impact. As for whether to adjust the timing of setting the parent region state in the meta table, we may need to sort out the split process as a whole. After all, when ZK assign is used, split transaction is complex.

I've considered the problem of unit testing, and it's difficult to mock this case --- I met this problem in an extreme scenario --- RS crash when split step after PONR but not entirely complete, no other RS is available, and the master switch occurs.

// Offline regions outside the loop and synchronized block to avoid
// ConcurrentModificationException and deadlock in case of meta anassigned,
// but RegionState a blocked.
Set<HRegionInfo> regionsToOffline = new HashSet<HRegionInfo>();
Map<String, HRegionInfo> daughter2Parent = new HashMap<>();
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Suggest this needs more comment on why we need this accounting in daughter2Parent.

HRegionInfo parent = daughter2Parent.get(hri.getEncodedName());
HRegionInfo info = getHRIFromMeta(parent);
if (info != null && info.isSplit() && info.isOffline()) {
regionsToClean.add(Pair.newPair(state.getRegion(), info));
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This daughter2Parent added stingency makes sense to me. Nice.

@saintstack
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Just to be explicit, this issue needs @wchevreuil approval too before can be merged (I like his comments)

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Let's move on with this and think on correcting the state/split flag updates on a separate jira, then.

@thangTang
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@saintstack hi, can you help me to merge this patch? @wchevreuil has approved. After that we will

think on correcting the state/split flag updates on a separate jira

@wchevreuil wchevreuil merged commit f99e899 into apache:branch-1 Feb 10, 2020
wchevreuil added a commit that referenced this pull request Feb 10, 2020
wchevreuil pushed a commit that referenced this pull request Feb 10, 2020
…e zk assign (#1071)

Signed-off-by: stack <[email protected]>
Signed-off-by: Wellington Chevreuil <[email protected]>
@wchevreuil
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Thanks for the contribution, @thangTang . I had merged this PR into branch-1.

@thangTang
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Thanks for the contribution, @thangTang . I had merged this PR into branch-1.

This is my first patch. I'm very happy to have a good start. Thank you and @wchevreuil very much :)

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4 participants