Install PostgreSQL into pgsql conda environment. (#49)

Install PGSQL=10 into dedicated conda environment to be compatible
with the stable AiiDA/AiiDAlab images out there.

.github/workflows/build_and_test_on_pr.yml

@@ -52,7 +52,7 @@ jobs:
           export DOCKERID=`docker run -v $PWD/tmp:/home/aiida -d aiida-prerequisites:latest`
           docker exec --tty --user root $DOCKERID wait-for-services
           docker exec --tty --user aiida $DOCKERID wait-for-services
-          docker exec --tty --user aiida $DOCKERID /bin/bash -l -c '/usr/lib/postgresql/14/bin/pg_ctl -D /home/$SYSTEM_USER/.postgresql status' # Check that postgres is up.
+          docker exec --tty --user aiida $DOCKERID /bin/bash -l -c '/opt/conda/envs/pgsql/bin/pg_ctl -D /home/$SYSTEM_USER/.postgresql status' # Check that postgres is up.
           docker exec --tty --user root $DOCKERID /bin/bash -l -c 'service rabbitmq-server status' # Check that rabbitmq is up.
           docker exec --tty --user aiida $DOCKERID /bin/bash -l -c 'conda create -y -n test_env python=3.8' # Check that one can create a new conda environment.
           docker exec --tty --user aiida $DOCKERID /bin/bash -l -c 'conda activate test_env' # Check that new environment works.

Dockerfile

@@ -52,7 +52,6 @@ RUN apt-get update && apt-get install -y --no-install-recommends  \
     graphviz              \
     locales               \
     less                  \
-    postgresql            \
     psmisc                \
     rabbitmq-server       \
     rsync                 \
@@ -93,6 +92,9 @@ RUN cd /tmp && \
     conda update --all --quiet --yes  && \
     conda clean --all -f -y
 
+# Install PostgreSQL in a dedicated conda environment.
+RUN conda create -c conda-forge -n pgsql postgresql=10.6 && conda clean --all -f -y
+
 # Copy the script load-singlesshagent.sh to /usr/local/bin.
 COPY bin/load-singlesshagent.sh /usr/local/bin/load-singlesshagent.sh
 

opt/start-postgres.sh

@@ -1,17 +1,17 @@
 #!/bin/bash
 
-PGSQL_VERSION=14
-PGBIN=/usr/lib/postgresql/${PGSQL_VERSION}/bin
+# Activate the conda environment with PostgreSQL installed in it.
+conda activate pgsql
 
 # -w waits until server is up
-PSQL_START_CMD="${PGBIN}/pg_ctl --timeout=180 -w -D /home/${SYSTEM_USER}/.postgresql -l /home/${SYSTEM_USER}/.postgresql/logfile start"
-PSQL_STOP_CMD="${PGBIN}/pg_ctl -w -D /home/${SYSTEM_USER}/.postgresql stop"
-PSQL_STATUS_CMD="${PGBIN}/pg_ctl -D /home/${SYSTEM_USER}/.postgresql status"
+PSQL_START_CMD="pg_ctl --timeout=180 -w -D /home/${SYSTEM_USER}/.postgresql -l /home/${SYSTEM_USER}/.postgresql/logfile start"
+PSQL_STOP_CMD="pg_ctl -w -D /home/${SYSTEM_USER}/.postgresql stop"
+PSQL_STATUS_CMD="pg_ctl -D /home/${SYSTEM_USER}/.postgresql status"
 
 # make DB directory, if not existent
 if [ ! -d /home/${SYSTEM_USER}/.postgresql ]; then
    mkdir /home/${SYSTEM_USER}/.postgresql
-   ${PGBIN}/initdb -D /home/${SYSTEM_USER}/.postgresql
+   initdb -D /home/${SYSTEM_USER}/.postgresql
    echo "unix_socket_directories = '/tmp'" >> /home/${SYSTEM_USER}/.postgresql/postgresql.conf
    ${PSQL_START_CMD}