aai-institute · fariedabuzaid · Feb 26, 2024 · Feb 5, 2024 · Feb 5, 2024 · Feb 6, 2024
diff --git a/Dockerfile b/Dockerfile
@@ -1,24 +1,31 @@
-FROM jupyter/minimal-notebook:python-3.9.7
+FROM jupyter/minimal-notebook:python-3.10.11
 
 # keep env var name in sync with config_local.yml
 ARG PARTICIPANT_BUCKET_READ_SECRET
 ENV PARTICIPANT_BUCKET_READ_SECRET=${PARTICIPANT_BUCKET_READ_SECRET}
 
 RUN if [ -z "$PARTICIPANT_BUCKET_READ_SECRET" ]; \
       then echo "The build arg PARTICIPANT_BUCKET_READ_SECRET must be set to non-zero, e.g. \
-by passing the flag --build-arg PARTICIPANT_BUCKET_READ_SECRET=$PARTICIPANT_BUCKET_READ_SECRET. " &&\
+      by passing the flag --build-arg PARTICIPANT_BUCKET_READ_SECRET=$PARTICIPANT_BUCKET_READ_SECRET. " &&\
       echo "If running in CI, this variable should have been included as GH secret in the repository settings." &&\
       echo "If you are building locally and the env var is not set,  \
-you might find the corresponding value inside config.yml under the 'secret' key." &&\
+      you might find the corresponding value inside config.yml under the 'secret' key." &&\
       exit 1; \
-    fi
+      fi
 
 USER root
 RUN apt-get update && apt-get upgrade -y
 
 # pandoc needed for docs, see https://nbsphinx.readthedocs.io/en/0.7.1/installation.html?highlight=pandoc#pandoc
 # gh-pages action uses rsync
-RUN apt-get -y install pandoc git-lfs rsync
+RUN apt-get -y install \
+      build-essential \
+      libblas-dev \
+      liblapack-dev \
+      gfortran \
+      pandoc \
+      git-lfs \
+      rsync
 
 USER ${NB_UID}
 
@@ -29,7 +36,6 @@ RUN bash build_scripts/install_presentation_requirements.sh
 COPY requirements-test.txt .
 RUN pip install -r requirements-test.txt
 
-
 # NOTE: this breaks down when requirements contain pytorch (file system too large to fit in RAM, even with 16GB)
 # NOTE: this might break down when requirements contain pytorch (file system too large to fit in RAM, even with 16GB)
 # If pytorch is a requirement, the suggested solution is to keep a requirements-docker.txt and only install

diff --git a/build_scripts/install_presentation_requirements.sh b/build_scripts/install_presentation_requirements.sh
@@ -37,7 +37,8 @@ BUILD_DIR=$(dirname "$0")
 
 (
   cd "${BUILD_DIR}/.." || (echo "Unknown error, could not find directory ${BUILD_DIR}" && exit 255)
-  conda install -y -c conda-forge notebook rise jupyter_contrib_nbextensions
+  conda install -y -c conda-forge notebook==6.5.6 jupyter sphinx sphinx_rtd_theme jupyter-book jupyter_contrib_nbextensions jupyter_nbextensions_configurator
+  pip install rise==5.7.1
   python build_scripts/configure_spellcheck_dict.py
   jupyter contrib nbextension install --user
   jupyter nbextensions_configurator enable --user

diff --git a/...ok/_images/034c4e31d3bc92f8612de40178832339a4e93da74ec7f75548b096f37f213bfe.png b/...ok/_images/034c4e31d3bc92f8612de40178832339a4e93da74ec7f75548b096f37f213bfe.png
diff --git a/...ok/_images/0f29822e1098cc6d20c906773bd5225622ba7d063cb9ade7cd7c0e1a38910023.png b/...ok/_images/0f29822e1098cc6d20c906773bd5225622ba7d063cb9ade7cd7c0e1a38910023.png
diff --git a/...ok/_images/1029132819d1da0d47ce4e31934711f97389693646f7caaa94917057a04437ae.png b/...ok/_images/1029132819d1da0d47ce4e31934711f97389693646f7caaa94917057a04437ae.png
diff --git a/...ok/_images/153acd8ca395e59946494198592c517524cf1498e0960898290f6f204b398ad7.png b/...ok/_images/153acd8ca395e59946494198592c517524cf1498e0960898290f6f204b398ad7.png
diff --git a/...ok/_images/15dd578a5dbfa699baeaaec94e9435423e1c2d084a93cd8bda72ffe3ff941af9.png b/...ok/_images/15dd578a5dbfa699baeaaec94e9435423e1c2d084a93cd8bda72ffe3ff941af9.png
diff --git a/...ok/_images/160f42a6f4087234bd7c887364cb5d0640a50251877a167747e669246e19a834.png b/...ok/_images/160f42a6f4087234bd7c887364cb5d0640a50251877a167747e669246e19a834.png
diff --git a/...ok/_images/1dc232c401dd2f57a938654777d2107891abd16e091ff877ce87880c1f03d74c.png b/...ok/_images/1dc232c401dd2f57a938654777d2107891abd16e091ff877ce87880c1f03d74c.png
diff --git a/...ok/_images/2734d8365da7be287bbed28a6cf59bb18a3f246d9c52774e6513b536ba134c7f.png b/...ok/_images/2734d8365da7be287bbed28a6cf59bb18a3f246d9c52774e6513b536ba134c7f.png
diff --git a/...ok/_images/2d0300de90ff407218ca7eb2bf524a3b7cbc1585958b3f066e0b7b4d3aa0165e.png b/...ok/_images/2d0300de90ff407218ca7eb2bf524a3b7cbc1585958b3f066e0b7b4d3aa0165e.png
diff --git a/...ok/_images/2de97be6b9cef26b0668a0efff5951a3e1a362283d3800f7fb8a0859b69b1bf4.png b/...ok/_images/2de97be6b9cef26b0668a0efff5951a3e1a362283d3800f7fb8a0859b69b1bf4.png
diff --git a/...ok/_images/2f285701ca0aae92d3623f92173532881fde6124102dfe5668b8e7f1fc1747bc.png b/...ok/_images/2f285701ca0aae92d3623f92173532881fde6124102dfe5668b8e7f1fc1747bc.png
diff --git a/...ok/_images/2f44e365baacc053ff566ccb3eb5fab9b39782cebd710715d22bb097cd58801e.png b/...ok/_images/2f44e365baacc053ff566ccb3eb5fab9b39782cebd710715d22bb097cd58801e.png
diff --git a/...ok/_images/2f72b53abf49fa4bd11ef648732b3a53c093dc2918b8123ef2814fe4a82ef6de.png b/...ok/_images/2f72b53abf49fa4bd11ef648732b3a53c093dc2918b8123ef2814fe4a82ef6de.png
diff --git a/...ok/_images/30fe144184dd92b3678755a7d191e8aab32fabf9ef72fbe551f664f9c4cf2f00.png b/...ok/_images/30fe144184dd92b3678755a7d191e8aab32fabf9ef72fbe551f664f9c4cf2f00.png
diff --git a/...ok/_images/336fdf0aa5e45f2116a7f0f7e84669d701a6897c0f1111e3d1089f7d34dd8269.png b/...ok/_images/336fdf0aa5e45f2116a7f0f7e84669d701a6897c0f1111e3d1089f7d34dd8269.png
diff --git a/...ok/_images/34e0ed46e865403b7f93ce8a006c456d90b7449ea8959a86c9f3239bdb55f8f1.png b/...ok/_images/34e0ed46e865403b7f93ce8a006c456d90b7449ea8959a86c9f3239bdb55f8f1.png
diff --git a/...ok/_images/3683dc3fc6cfc282565a0af35f617b311bea4d0b726f26dd850a67d6f4b2de14.png b/...ok/_images/3683dc3fc6cfc282565a0af35f617b311bea4d0b726f26dd850a67d6f4b2de14.png
diff --git a/...ok/_images/3b9f87a0448c41778deb89242ebd157ebf2ff33faadd7531ba879dbf32e5228a.png b/...ok/_images/3b9f87a0448c41778deb89242ebd157ebf2ff33faadd7531ba879dbf32e5228a.png
diff --git a/...ok/_images/3def6bdd77a03c85dc711d7eebb308e64b9303614f871f6d1dab086bf40a117f.png b/...ok/_images/3def6bdd77a03c85dc711d7eebb308e64b9303614f871f6d1dab086bf40a117f.png
diff --git a/...ok/_images/4191e0f5c8d5b6e3a5e336dea0a3ec44fbdf368e64725b88fca4b657f017791a.png b/...ok/_images/4191e0f5c8d5b6e3a5e336dea0a3ec44fbdf368e64725b88fca4b657f017791a.png
diff --git a/...ok/_images/46c7ea326fb9c222219b87a5b4da31e9df3fde73345dd1f5055ff3082a5f0969.png b/...ok/_images/46c7ea326fb9c222219b87a5b4da31e9df3fde73345dd1f5055ff3082a5f0969.png
diff --git a/...ok/_images/483bce9357849e6defda6739a17c8974d9cbf8ac0d3b2e7bae7d0381666de7bc.png b/...ok/_images/483bce9357849e6defda6739a17c8974d9cbf8ac0d3b2e7bae7d0381666de7bc.png
diff --git a/...ok/_images/4edf977cde07b6eb74825583caea3212c7e944e248c9ed5c070a490b29be71da.png b/...ok/_images/4edf977cde07b6eb74825583caea3212c7e944e248c9ed5c070a490b29be71da.png
diff --git a/...ok/_images/59c7890b954561c8bd21d61bd626a9aac65e6a3ea5bf5311ef276f8dd4d6eb07.png b/...ok/_images/59c7890b954561c8bd21d61bd626a9aac65e6a3ea5bf5311ef276f8dd4d6eb07.png
diff --git a/...ok/_images/5b8f1324d2010dc6eabaabea3fe82e26f8d0db33303b3048b903d61ce88b6d2f.png b/...ok/_images/5b8f1324d2010dc6eabaabea3fe82e26f8d0db33303b3048b903d61ce88b6d2f.png
diff --git a/...ok/_images/61ee4a0612ff6c68cc0467fb54dc3c9abb1ec1a6cf77039e58e53b40bda3ead4.png b/...ok/_images/61ee4a0612ff6c68cc0467fb54dc3c9abb1ec1a6cf77039e58e53b40bda3ead4.png
diff --git a/...ok/_images/6908378008049b76b0e21752876306533b095562a488826db944a7d967d61d6d.png b/...ok/_images/6908378008049b76b0e21752876306533b095562a488826db944a7d967d61d6d.png
diff --git a/...ok/_images/6c003b8ccd6957eae38c533fdbdefdacda017b971ed44fe13cbad9f77a8ceb63.png b/...ok/_images/6c003b8ccd6957eae38c533fdbdefdacda017b971ed44fe13cbad9f77a8ceb63.png
diff --git a/...ok/_images/6f7082a3e1919cea730036a977d12eb061aaf33c02440bf21c3bfe85901726c9.png b/...ok/_images/6f7082a3e1919cea730036a977d12eb061aaf33c02440bf21c3bfe85901726c9.png
diff --git a/...ok/_images/761b8336c226313bd4e78723578750af41d53a18508bda6d3e0d28874598ad63.png b/...ok/_images/761b8336c226313bd4e78723578750af41d53a18508bda6d3e0d28874598ad63.png
diff --git a/...ok/_images/7ad64e5f2626526af91b29ff13b31035e88d209e61acf5ec30dc287f35c36cc3.png b/...ok/_images/7ad64e5f2626526af91b29ff13b31035e88d209e61acf5ec30dc287f35c36cc3.png
diff --git a/...ok/_images/7ae3ffdf6d457769845542d21d9d7156fcb7c7d92f61c1d714587233f310dbfa.png b/...ok/_images/7ae3ffdf6d457769845542d21d9d7156fcb7c7d92f61c1d714587233f310dbfa.png
diff --git a/...ok/_images/7cc7e5e020b9ac1ab6e932ede4ae48c9c6e59789cabfbe45f56753800467e787.png b/...ok/_images/7cc7e5e020b9ac1ab6e932ede4ae48c9c6e59789cabfbe45f56753800467e787.png
diff --git a/...ok/_images/86d2a436bf71333f3dd20effda401fdd74722b970e73d6b73d252b91f7234113.png b/...ok/_images/86d2a436bf71333f3dd20effda401fdd74722b970e73d6b73d252b91f7234113.png
diff --git a/...ok/_images/9715a35b72853a1a097aa2be859e7c3c85ab4664e3ccd12ed8efa0678a7771d2.png b/...ok/_images/9715a35b72853a1a097aa2be859e7c3c85ab4664e3ccd12ed8efa0678a7771d2.png
diff --git a/...ok/_images/a6aa58ac3c37f7b0d0dc0771d4e593ba652e2626b8dbbd1ee661f76062de84e8.png b/...ok/_images/a6aa58ac3c37f7b0d0dc0771d4e593ba652e2626b8dbbd1ee661f76062de84e8.png
diff --git a/...ok/_images/ae609ce2d3546ed0f37470ab6ef9937b4483f888147042173e6adb9d271f3321.png b/...ok/_images/ae609ce2d3546ed0f37470ab6ef9937b4483f888147042173e6adb9d271f3321.png
diff --git a/...ok/_images/b3428b996c7ff41b35e56721c81abf8a3db4b67d03c789c561c3c2d9d6f37d0f.png b/...ok/_images/b3428b996c7ff41b35e56721c81abf8a3db4b67d03c789c561c3c2d9d6f37d0f.png
diff --git a/...ok/_images/b8605bebedff395c1c1cb4e7d5cb49197265be8cacfd6ed73ee301d795f5718d.png b/...ok/_images/b8605bebedff395c1c1cb4e7d5cb49197265be8cacfd6ed73ee301d795f5718d.png
diff --git a/...ok/_images/b8f56c2d73a2c848172fba8966f5a23c3f03cab322e27fba1fb5b4294a0d9430.png b/...ok/_images/b8f56c2d73a2c848172fba8966f5a23c3f03cab322e27fba1fb5b4294a0d9430.png
diff --git a/...ok/_images/babaa07d3c2a634e8cea35ef0c9c50e94be54020fd10c93772ae8f3972e42994.png b/...ok/_images/babaa07d3c2a634e8cea35ef0c9c50e94be54020fd10c93772ae8f3972e42994.png
diff --git a/...ok/_images/bae8dfe177a9bdc33028d3085bb03194a27d9342032c31179ed833b227275062.png b/...ok/_images/bae8dfe177a9bdc33028d3085bb03194a27d9342032c31179ed833b227275062.png
diff --git a/...ok/_images/beb67c2412717745334996a42090fd2693cbf1fc4a2fa115d65fdca9ff84363d.png b/...ok/_images/beb67c2412717745334996a42090fd2693cbf1fc4a2fa115d65fdca9ff84363d.png
diff --git a/...ok/_images/bf53d7def6cec42ddcf484dc7ab5cc6188ceaedde6bec6828be910e9ccb59d7b.png b/...ok/_images/bf53d7def6cec42ddcf484dc7ab5cc6188ceaedde6bec6828be910e9ccb59d7b.png
diff --git a/...ok/_images/c1038a79d6422611572109ffb91683eeb58d2696038c7ab865985dd4ff012842.png b/...ok/_images/c1038a79d6422611572109ffb91683eeb58d2696038c7ab865985dd4ff012842.png
diff --git a/...ok/_images/c39da68496e1b9672277f6652267da9c168eea00a53effbced0718229665d6a9.png b/...ok/_images/c39da68496e1b9672277f6652267da9c168eea00a53effbced0718229665d6a9.png
diff --git a/...ok/_images/c5394571e8f234fc3d7867c2d53eaa48b8107a09aeeab7ad87b729929c643ae0.png b/...ok/_images/c5394571e8f234fc3d7867c2d53eaa48b8107a09aeeab7ad87b729929c643ae0.png
diff --git a/...ok/_images/de0ce9c82edb75c96c5f7d0a55152b90fc83277df8c724d7cce75d600a06dc50.png b/...ok/_images/de0ce9c82edb75c96c5f7d0a55152b90fc83277df8c724d7cce75d600a06dc50.png
diff --git a/...ok/_images/de31be9c068bc3a21c2ebf609d7b65e159ecdc89af90b538c5c3b11182f9a974.png b/...ok/_images/de31be9c068bc3a21c2ebf609d7b65e159ecdc89af90b538c5c3b11182f9a974.png
diff --git a/...ok/_images/e0e7431c54a7649915d1f5d39ffbb37951a73c4a7cf1cf5cbf224d5cf3d0a03f.png b/...ok/_images/e0e7431c54a7649915d1f5d39ffbb37951a73c4a7cf1cf5cbf224d5cf3d0a03f.png
diff --git a/...ok/_images/e495c38996cd35772ae7a5118b445f2701c0b077b14e85941a03fc10ed13e664.png b/...ok/_images/e495c38996cd35772ae7a5118b445f2701c0b077b14e85941a03fc10ed13e664.png
diff --git a/...ok/_images/e4e09d3f1bfdadc9a0e95f198eaacfd1b28944d9fa6486c883b30512ce3b70e4.png b/...ok/_images/e4e09d3f1bfdadc9a0e95f198eaacfd1b28944d9fa6486c883b30512ce3b70e4.png
diff --git a/...ok/_images/ebf8ed8762fc728e0823c21bed80b5ede04fee22bd0063888398ee37412f00db.png b/...ok/_images/ebf8ed8762fc728e0823c21bed80b5ede04fee22bd0063888398ee37412f00db.png
diff --git a/...ok/_images/ede9d428cccfce95488c7407663a89e285afe562ade49a0f4c5c1cdfeacf9f99.png b/...ok/_images/ede9d428cccfce95488c7407663a89e285afe562ade49a0f4c5c1cdfeacf9f99.png
diff --git a/...ok/_images/f077786ed17a9e7453a4ef1571590162c7c7976015155d087d103e7a382153d4.png b/...ok/_images/f077786ed17a9e7453a4ef1571590162c7c7976015155d087d103e7a382153d4.png
diff --git a/...ok/_images/f0dae086e85418a9b6c0f9bd566be89834bbd972317e9682b9a66591eb19f0d7.png b/...ok/_images/f0dae086e85418a9b6c0f9bd566be89834bbd972317e9682b9a66591eb19f0d7.png
diff --git a/...ok/_images/f12257d70f4333c6fb7718540fff6a92d48d5c9d4d4d6aed406b6a46a03a25dd.png b/...ok/_images/f12257d70f4333c6fb7718540fff6a92d48d5c9d4d4d6aed406b6a46a03a25dd.png
diff --git a/...ok/_images/f5e5dd66ced5ac9cee2093dd4cae93b469f1363554f93208acc51e5b024d5907.png b/...ok/_images/f5e5dd66ced5ac9cee2093dd4cae93b469f1363554f93208acc51e5b024d5907.png
diff --git a/docs/_static/jupyter_book/_sources/intro.md b/docs/_static/jupyter_book/_sources/intro.md
@@ -0,0 +1,9 @@
+# practical anomaly detection - Notebook Pages
+
+Welcome to the practical anomaly detection jupyter book. 
+These pages contain all rendered notebooks and serve
+as a reference. Feel free to look around!
+
+If you want to execute or edit the notebooks, install
+the requirements (or use docker) and start jupyter 
+as described in the `README.md`.