scib-metrics 0.1.0

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #65
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #66
• add cruft json for sync by @adamgayoso in #67
• Automated template update from cookiecutter-scverse by @github-actions in #68
• initial benchmarker and plotting by @adamgayoso in #52
• bump version and benchmarking changes by @adamgayoso in #69

New Contributors

• @github-actions made their first contribution in #68

Full Changelog: 0.0.9...0.1.0

scib-metrics 0.0.9

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #57
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #59
• graph conn by @adamgayoso in #61
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #63
• Implement Kbet by @adamgayoso in #60
• 0.0.9 release by @adamgayoso in #64

Full Changelog: 0.0.8...0.0.9

scib-metrics 0.0.8

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #48
• Precompute and pass in pdists into kmeans init by @martinkim0 in #49
• kmeans_init to random by @adamgayoso in #54
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #53
• 008 release by @adamgayoso in #56

Full Changelog: 0.0.7...0.0.8

scib-metrics 0.0.7

What's Changed

• Kmeans memory fix by @martinkim0 in #45
• Move PCR to utils module in favor of PCR comparison by @martinkim0 in #46

Full Changelog: 0.0.6...0.0.7

scib-metrics 0.0.6

What's Changed

• Reimplement silhouette in a mem constant way, pdist using lax scan by @adamgayoso in #42
• 0.0.6 release by @adamgayoso in #44

Full Changelog: 0.0.5...0.0.6

scib-metrics 0.0.5

What's Changed

• Cleanup silhouette variables by @adamgayoso in #31
• standardize docstrings by @adamgayoso in #30
• K-means++ by @martinkim0 in #23
• PC regression in Jax by @martinkim0 in #16
• Lax'd/mapped silhouette and squareform pdist by @adamgayoso in #33
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #19
• PCR comparison by @martinkim0 in #38
• Update cookicutter template for sync by @adamgayoso in #35
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #37
• Bump version 0.0.5 by @adamgayoso in #40

New Contributors

• @martinkim0 made their first contribution in #23
• @pre-commit-ci made their first contribution in #19

Full Changelog: 0.0.4...0.0.5

scib-metrics 0.0.4

What's Changed

• leiden nmi ari by @adamgayoso in #24
• LISI implementation by @justjhong in #20
• 0.0.3 -> 0.0.4 by @adamgayoso in #29

New Contributors

• @justjhong made their first contribution in #20

Full Changelog: 0.0.3...0.0.4

scib-metrics 0.0.3

What's Changed

• Improve kmeans accuracy with centering before distances by @adamgayoso in #18
• use sphinx book theme, myst-notebook by @adamgayoso in #22
• Add references, linkcode to docs, remove scanpydoc by @adamgayoso in #25
• fix linkcode github link by @adamgayoso in #26
• Fix linkcode again by @adamgayoso in #27
• Bump version: 0.0.2 → 0.0.3 by @adamgayoso in #28

Full Changelog: 0.0.2...0.0.3

scib-metrics 0.0.2

What's Changed

• add release workflow, update changelog, pypi upload by @adamgayoso in #15

Full Changelog: 0.0.1...0.0.2

scib-metrics 0.0.1

Initial release!

What's Changed

• Jax Silhouette by @adamgayoso in #1
• move silhouette to utils by @adamgayoso in #2
• Update README.md by @adamgayoso in #3
• initial docs by @adamgayoso in #4
• silhouette batch + labels by @adamgayoso in #5
• add kmeans, nmi, ari metrics by @adamgayoso in #6
• Isolated labels + settings by @adamgayoso in #7

New Contributors

• @adamgayoso made their first contribution in #1

Full Changelog: https://github.com/YosefLab/scib-metrics/commits/0.0.1