Update template to v0.4.0

[scverse-bot]

cookiecutter-scverse released v0.4.0.

Changes

What's Changed

• pre-commit updates
• Fix installation instructions on contributing guide by @grst in Fix installation instructions on contributing guide scverse/cookiecutter-scverse#271
• fix typo by @Zethson in fix typo scverse/cookiecutter-scverse#279
• Use cookiecutter variable for project repo in conf.py by @Zethson in Use cookiecutter variable for project repo in conf.py scverse/cookiecutter-scverse#278
• Add node_modules to .gitignore by @Zethson in Add node_modules to .gitignore scverse/cookiecutter-scverse#277
• Update required python versions according to scientific python SPEC 0 by @grst in Update required python versions according to scientific python SPEC 0 scverse/cookiecutter-scverse#284
• Require myst-nb >= 1.1.0 by @grst in Require myst-nb >= 1.1.0 scverse/cookiecutter-scverse#285

Full Changelog: scverse/cookiecutter-scverse@v0.3.1...v0.4.0

Additional remarks

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[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 91.09%. Comparing base (081dff0) to head (0441fd9).
Report is 9 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #165      +/-   ##
==========================================
- Coverage   91.14%   91.09%   -0.05%     
==========================================
  Files          26       26              
  Lines         971      966       -5     
==========================================
- Hits          885      880       -5     
  Misses         86       86              

Files with missing lines	Coverage Δ
src/scib_metrics/_settings.py	73.68% <100.00%> (ø)
src/scib_metrics/_types.py	100.00% <100.00%> (ø)
src/scib_metrics/benchmark/_core.py	98.69% <100.00%> (+<0.01%)	⬆️
src/scib_metrics/metrics/_isolated_labels.py	96.77% <ø> (-0.11%)	⬇️
src/scib_metrics/metrics/_kbet.py	73.62% <100.00%> (-0.29%)	⬇️
src/scib_metrics/utils/_pca.py	93.61% <100.00%> (-0.14%)	⬇️
src/scib_metrics/utils/_pcr.py	92.30% <ø> (-0.29%)	⬇️
src/scib_metrics/utils/_utils.py	59.37% <100.00%> (-1.24%)	⬇️

---- 🚨 Try these New Features:

• Flaky Tests Detection - Detect and resolve failed and flaky tests