v0.1.2.1: Minor release for Zenodo DOI minting

• No changes compared to 0.1.2

v0.1.2

Pull the corresponding docker image from dockerhub:

$ docker pull jweile/mavevis:0.1.2

Bug fixes:

• bugfix: speeding up image map loading
• bugfix: conservation sometimes used the wrong reference sequence due to Uniprot returning sequences out of order.

Other changes:

• using cloud repo for R dependencies

v0.1.0 : First official release

Pull the corresponding docker image from dockerhub:

$ docker pull jweile/mavevis:0.1.0

Changes

• issue #53 : by popular request, using larger axis labels where there is room
• issue #54 : Tooltips now explain the purposes of different inputs
• issue #49 : fixed handling of datasets with missing sd/se;
• corrected terminology in mouseover tooltips; report whether se and sd was used
• issue #55 : show version info at bottom of page
• Feature #49 : Tooltips with score information when hovering over map
• small bugfix: First line of error messages was cut-off
• Implemented Feature request #50 : legend in separate panel; also fixed width adjustment bug
• fixed issue #43 : docker image now based on ubuntu:latest
• implemented feature request #9 : drawing maps without uniprot or PDB entry
• fixed issue #48 : allow maps to start mid-sequence
• fixing synchronization error due to empty pdb table
• scoreset type detection
• pdb file compatibility fix
• fixed a bug causing multiple sync jobs to get started concurrently
• fixed problems originating downstream of the new csv parser changes (issue #40 )
• issue #41 : Adding licensing info
• issue#35 : help page added
• issue #38. finding the matching uniref cluster
• fixing corrupt pdb table
• issue #30: added prominent link to mavedb
• issue #33: only showing the last 1000 lines of logfiles in the debug view
• corrected alignment of structure tracks
• using the new continuous color gradient system
• fix for issue #29: missing rownames in mutation descriptor cache files causing broken indexing
• Issue #11: Filter PDB structure tables for overlap with map
• fix issue #25: structural feature calculation error due to fixed-width file parser bug
• faster batch download of uniprot sequences (issue #5)
• addressing more sync issues due to missing uniprot IDs (Issue #26)
• handle missing values in score column and handle deviating names for stderr column
• Fix issue #26: Handle missing Uniprot ID and Offset from MaveDB
• Added Example button (Issue #14); Renamed Submit button to Visualize!
• fix for issue #24: no new sync jobs are started if a previous one is still running
• fixed SVG download (issue #18); better handling of NULL values
• Improved and enabled background synchronization (Issue #17); added caching for structural features (Issue #4)
• genophenogram: more comments, replacing oversized error bars with crosses, stub for nucleotide-centric plot
• adjust to updated MaveDB HGVS columns
• supporting get requests for ssid (issue #20)
• Options for SVG download (Issue #18).
• added caching of variant interpretations
• Addressing issue #12 by forcing uniform jquery-ui widget style; improved download button
• reset form when scoreset changes
• rewrite of UI; additional apache security
• pdf manual
• tightening apache security
• add a debug service to inspect logfiles from browser; add error handling to daemon
• favicon added
• new logo and error dialog via jqueryui
• added documentation
• check for external dependencies
• minor formatting
• only show result panel when ready
• download buttons added
• status service uses JSON now
• added documentation
• continuing to build webapp
• daemon-based submission system
• allow png
• autodetect flipped maps