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Release 2024.4.2 #321

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merged 54 commits into from
Nov 21, 2024
Merged

Release 2024.4.2 #321

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ef1f4f5
Add clinical view to scoreset histogram for scoresets with mavedb_cln…
ashsny Jul 13, 2024
6dbca1f
Add legend. Add variant info to tooltip.
ashsny Jul 16, 2024
8f4f35e
Add custom view, fix a few bugs.
ashsny Jul 16, 2024
038f9a8
Add a TODO reflecting not-always-accurate tooltip.
ashsny Jul 16, 2024
673c878
Add another TODO re: tooltip variant counts.
ashsny Jul 16, 2024
0a3f046
Fix tooltip display of clinical info-less variants, broken by earlier…
ashsny Jul 16, 2024
9a17182
Fix code to handle score-less variants.
ashsny Jul 16, 2024
e2527a3
Change display name for conflicting series.
ashsny Jul 16, 2024
2e22186
Initialize variant screen
sallybg Jul 18, 2024
5b99988
Refactored the histogram's D3 code into a generic module.
jstone-dev Jul 21, 2024
248f17f
Range display on the score histogram
jstone-dev Jul 21, 2024
65451aa
Hard-coded ranges for two score sets
jstone-dev Jul 21, 2024
f3c7726
Hide the selection tooltip when the heatmap client clears the selection.
jstone-dev Jul 21, 2024
9ceba05
Added a legend background for improved visibility.
jstone-dev Jul 21, 2024
2ab2912
Leave extra space above the tallest histogram bar, to avoid crowding …
jstone-dev Jul 21, 2024
6bc6a29
Added evidence strengths (static mockup).
jstone-dev Jul 21, 2024
be4ac42
Histogram variant tooltip title: Fall back to HGVS strings.
jstone-dev Jul 22, 2024
bdcba2c
Ensure that a tooltip is shown if a selection has already been set be…
jstone-dev Jul 22, 2024
48f61a7
Variant screen mockup format changes and links
jstone-dev Jul 22, 2024
6d30e43
Add Preview Environment
bencap Jul 30, 2024
8df6bc6
Add urn in experiment dropdown menu. Back end orders the expeirments …
EstelleDa Oct 17, 2024
c2e70ff
Only Populate Experiment Metadata when a new Experiment is Selected
bencap Oct 17, 2024
51821e1
Limit “copy from existing target gene” to the user’s own target genes.
jstone-dev Oct 21, 2024
cff0793
Change autocomplete to dropdown.
EstelleDa Oct 22, 2024
4f898b2
Merge pull request #306 from VariantEffect/estelle/addUrnInExperiment…
EstelleDa Oct 22, 2024
97bb4dc
Only Allow Users to Select from Active Licenses
bencap Oct 22, 2024
d404156
This is the original code. Maybe mix with Autocomplete codes. @change…
EstelleDa Oct 24, 2024
789a85c
Merge pull request #309 from VariantEffect/estelle/debugPopulateExper…
EstelleDa Oct 24, 2024
8bbc55e
Merge branch 'clinical-visualization' into feature/bencap/297/shareab…
bencap Oct 24, 2024
080f2d4
Use Variants Prop for Histogram
bencap Oct 24, 2024
c9c9561
Fixed: Edit Button not Appearing After Experiment Publication
bencap Oct 28, 2024
a06e2d1
Add Feature Flag for Clinical Features
bencap Oct 31, 2024
cab1f42
Refactor Heatmap, Add Shareable Variant State
bencap Oct 31, 2024
2b31297
Merge pull request #313 from VariantEffect/bugfix/bencap/312/edit-but…
bencap Nov 1, 2024
38cbfc1
Display Target Categories in a User Friendly Way
bencap Nov 4, 2024
8555b9d
Expand Editable Score Set Metadata
bencap Nov 8, 2024
080d827
Merge pull request #315 from VariantEffect/feature/bencap/35/api-like…
bencap Nov 12, 2024
9cdbc65
Display a Nucleotide Heatmap for Non-Coding Score Sets
bencap Nov 15, 2024
847d0ba
Update Zenodo Dataset Link
bencap Nov 15, 2024
32a6c4f
Merge pull request #318 from VariantEffect/feature/bencap/317/basic-n…
bencap Nov 18, 2024
dbb13ac
Always Display Heatmap Scrollbar on OSX
bencap Nov 18, 2024
2e5a28e
Merge pull request #316 from VariantEffect/feature/bencap/editable-da…
bencap Nov 18, 2024
5ff6ff4
Merge pull request #308 from VariantEffect/maintenance/bencap/74/upda…
bencap Nov 18, 2024
c0d6ac9
Merge pull request #307 from VariantEffect/jstone-dev/273/target-gene…
bencap Nov 18, 2024
affc2af
Refresh Heatmaps at Once; Exclude Datum from Visibility
bencap Nov 20, 2024
bd03ef0
Use DOI Based Zenodo Link to Always Resolve to Most Recent Version
bencap Nov 20, 2024
b25ce01
Generate Heatmap Range for Protein Based Sequences
bencap Nov 20, 2024
5d82fc7
Ignore Variants out of Target Range
bencap Nov 20, 2024
26e7c33
Merge pull request #319 from VariantEffect/maintenance/bencap/359/upd…
bencap Nov 20, 2024
271df1d
Fixed: Typo in env.live Feature Flag
bencap Nov 20, 2024
348721a
Fixed: Histogram bins were not displaying when the first bin began at…
bencap Nov 20, 2024
f1cda15
Merge pull request #314 from VariantEffect/feature/bencap/297/shareab…
bencap Nov 20, 2024
3fbb6d0
Bump Version Number
bencap Nov 21, 2024
f4680f3
Remove Unnecessary Log Statement in Histogram
bencap Nov 21, 2024
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1 change: 1 addition & 0 deletions .env.dev
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
VITE_API_URL=http://localhost:8002/api/v1
VITE_APP_URL=https://127.0.0.1:8081
VITE_SITE_TITLE=MaveDB (local API)
CLINICAL_FEATURES_ENABLED=false
1 change: 1 addition & 0 deletions .env.live
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@@ -1,3 +1,4 @@
VITE_API_URL=https://api.mavedb.org/api/v1
VITE_APP_URL=https://mavedb.org
VITE_SITE_TITLE=MaveDB
CLINICAL_FEATURES_ENABLED=false
4 changes: 4 additions & 0 deletions .env.preview
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@@ -0,0 +1,4 @@
VITE_API_URL=https://api.mavedb.org/api/v1
VITE_APP_URL=https://preview.mavedb.org
VITE_SITE_TITLE=MaveDB (Preview Build)
CLINICAL_FEATURES_ENABLED=true
1 change: 1 addition & 0 deletions .env.prodapi
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@@ -1,3 +1,4 @@
VITE_API_URL=https://api.mavedb.org/api/v1
VITE_APP_URL=https://127.0.0.1:8081
VITE_SITE_TITLE=MaveDB (prod API)
CLINICAL_FEATURES_ENABLED=false
1 change: 1 addition & 0 deletions .env.staging
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@@ -1,3 +1,4 @@
VITE_API_URL=https://api.staging.mavedb.org/api/v1
VITE_APP_URL=https://staging.mavedb.org
VITE_SITE_TITLE=MaveDB (Staging)
CLINICAL_FEATURES_ENABLED=false
24 changes: 12 additions & 12 deletions package-lock.json
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4 changes: 2 additions & 2 deletions package.json
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@@ -1,6 +1,6 @@
{
"name": "mavedb-ui",
"version": "2024.4.1",
"version": "2024.4.2",
"private": true,
"scripts": {
"build": "vite build --mode=${MODE=live}",
Expand All @@ -11,7 +11,7 @@
"@fontsource/raleway": "^5.0.16",
"axios": "^1.6.2",
"chart.js": "^4.4.1",
"d3": "^7.8.5",
"d3": "^7.9.0",
"datatables.net": "1.11.5",
"datatables.net-buttons": "1.7.0",
"datatables.net-buttons-dt": "1.7.0",
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