62 r test ci #86
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62 r test ci #86
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Install conda outside r
run while testing
deactivate (likely fail on mac)
deactivate test
specify channel
Leave test for reticulate to find
Use miniforge3, where conda-forge is already default
"" matter
Try read out
try pip installing from path
Helps if input is in right place...
re-enable
pip install then clone
Drop test on branch commits
jbousquin
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Jul 30, 2024
* Update domains.py 'Field' -> 'Field***' * 62 r test ci (#86) Update test_r.yaml to install conda outside r, specifically miniforge, then run on env from setup with current package (vs pip installing main)
jbousquin
added a commit
that referenced
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Aug 3, 2024
* Implementing suggested ruff rules * isort * Fix whitespace (many of these were copied from docs example execution - need to confirm it passes docs tests) * Run test.yml on push to this branch * Whitespace * F401 (redundant alias) * Missed whitespace * First attempt w/ pre-commit * Fix indent * indent/drop name * Rename .pre-commit-config.yml to .pre-commit-config.yaml yAml * Update .pre-commit-config.yaml fix file structure * Reduce .pre-commit-config.yaml Reduce what files it is run on * Update domains.py Doesn't need to be raw string (see Batalex pyOpenSci/software-submission#157 (comment)) * Dict doc strings as module level attributes * Update to main (#88) * Update domains.py 'Field' -> 'Field***' * 62 r test ci (#86) Update test_r.yaml to install conda outside r, specifically miniforge, then run on env from setup with current package (vs pip installing main) * Update .pre-commit-config.yaml From issue: pass_filenames: false in the pre-commit config so that the file discovery is done by Ruff taking into account the includes and excludes configured by the user in their pyproject.toml * Update .pre-commit-config.yaml Try updating to patch version and specify config in args. * Update pyproject.toml try withouth 'docstring-code-format = true' as this may override other settings. * Update pyproject.toml Try to get pre-commit to see config * Update pyproject.toml Warning message, so it is getting these settings from the toml? * Update conf.py E501 * Update basis.py E501 * Update basis.py Moved constant doc-string to module level * Update clean.py E501 * Update convert.py E501 * Update conf.py lint/format edits * Update pyproject.toml Without single checking if double is default * Update pyproject.toml Will move to one or the other (likely default double for ease), but trying to post-pone to work through diff * lint/formating * linted * W293 * black format/lint * W605 - try pulling r str out of test doc-string and instead as a comment. Comment shouldn't cause problems but this one has in the past. * I001 (all whitespace except test_harmonize_WQP.py) * lint conf file * lint * Add white space between module doc-string and imports * Format: add whitespace after mod doc-string * Add assert for actual2 - where the characteristics specific function is used instead of the generic. * Resolved some E501 * Check if new line fails doctest * Revert to get doc-test passing * Spread out example df entry * Spread out dict read out to reduce line length. White space is already normalized for doc-test so this may pass. * Revert * Spread out building df for wq_dat.WQCharData example. * spread out example df for we_date.measure_mask() * Shotern len of dict for wq_data.replace_unit_str() & wq_data.apply_conversion() examples * Attempt to skip E501 on this line * skip rule on line * Last attempt to ignore line too long in docstrings (3) * Update pyproject.toml Drop single quote for lint * '' -> "" * Update test.yml Revert back to testing on main only
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Bring main up to date with R tests