231 add data retrieval via api vignette #260
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…hub.com/USEPA/CompTox-ToxCast-tcpl into 231-add-data-retrieval-via-API-vignette
add in index to flag na/null check
for hopefully the last time...
…ug-fixes 235 247 248 206 api plotting and bug fixes
vignettes/Data_retrieval_via_API.Rmd
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| ## Standalone Format Plot with API | ||
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| Suppose you have a database where you process dose-response data and wish to compare with how it was previously processed in invitrodb v4.1. The API connection supports <font face="CMTT10">tcplPlot</font>'s standalone plotting feature! Using the utility function <font face="CMTT10">tcplPlotLoadData</font> while connected to the API, you can pass along that data to <font face="CMTT10">tcplPlot</font>'s `dat` parameter and use `compare.val` for the database data. |
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tcplPlot has been updated for advanced comparison plotting across data connections. If working on a local invitrodb instance, additional dose-response data may be available, data reprocessed, methods adjusted, etc. Users may wish to compare data released in different versions, such as comparing API data or versioned database to one's local invitrodb database.
Using the utility function tcplPlotLoadData while connected to the API, users can pass along data via tcplPlot’s dat parameter and use compare.val for their database data.
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Is this backwards compatible with v3.5? If not, maybe mention that
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mentioned "versioned database (invitrodb v4.1 and later)"
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New default driver seems to be working well to load data from API! To test, I commented out the tcplConf in the TcplFit2 HitCalling Bug Analysis Rmd Getting the following error when trying to plot: |
Added sc1 method bval.nwlls.med
This is because this branch needs to be rebased with dev, which recently had the PR from the plotting updates that supported API plotting. |
…hub.com/USEPA/CompTox-ToxCast-tcpl into 231-add-data-retrieval-via-API-vignette merge rebase from dev
Closes #231. Added Data Retrieval via API vignette. may need
ccdRdev branch to buildCloses #218. Changed tcplConfDefault to use default tcpl API key. Added note to API vignette regarding this.