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set all b and n wells to 0 conc and after check for any remaining null #181

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Dec 14, 2023
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set all b and n wells to 0 conc and after check for any remaining null #181

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9 changes: 6 additions & 3 deletions R/tcplWriteLvl0.R
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Original file line number Diff line number Diff line change
Expand Up @@ -104,10 +104,13 @@ tcplWriteLvl0 <- function(dat, type) {
if (dat[, any(is.na(acid))]) {
stop("No ACID supplied for some samples. Ensure all samples have an ACID then rerun.")
}

#set all na b or n wells to conc = 0
dat[is.na(conc) & (wllt %in% c('b', 'n')), conc:=0]

## Check for 0 concentration values
if (dat[,any(conc == 0)]) {
stop("Cannot process a concentration value of 0. Confirm source document lists 0 as concentration value and rerun with dummy value of .01")
## Check for null concentration values
if (dat[,any(is.na(conc))]) {
stop("Cannot process a NULL concentration value. Update missing concentration value then rerun.")
}

## Check wllt has been set for all samples
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