42 add option for export ready status in tcplsubsetchid #110
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…low a representative sample to be selected if the assay is not export ready 1
Ashley-Ko
reviewed
Aug 2, 2023
Ashley-Ko
approved these changes
Aug 2, 2023
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
If we were to run the following in
invitrodbwe would expect no m5ids to have chid_rep == 1 where the associated aeid is export_ready == 0.dat5 <- tcplPrepOtpt(tcplLoadData(lvl = 5, type = "mc"))
dat5 <- dat5[!is.na(chid)]
sub5 <- tcplSubsetChid(dat5)[, list(m5id, chid)]
setkey(dat5, "m5id")
setkey(sub5, "m5id")
dat5 <- sub5[dat5]
dat5[, chid_rep := 1]
dat5[is.na(chid), chid_rep := 0]
mc5_chid <- dat5[, list(m5id, chid_rep)]