Regenerate Manifest.toml with Julia 1.9.2 (#394)

* Regenerate Manifest.toml with Julia 1.9.1 * Fixes logistic regression tests * Fix linear regression tutorial * Loosen test tolerance * Some updates * Better debugging * Update assertion * Update threshold * Update manifest files * Update a few assertions * Change assertions * Some VI updates * Update 09_variational-inference.jmd * Update 09_variational-inference.jmd * Sign treehashes --------- Co-authored-by: Elliot Saba <[email protected]>
TuringLang · Jul 10, 2023 · a85147f · a85147f
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Showing 34 changed files with 12,530 additions and 7,739 deletions.
diff --git a/.buildkite/launch_tutorials.yml.signature b/.buildkite/launch_tutorials.yml.signature
diff --git a/.buildkite/run_tutorial.yml b/.buildkite/run_tutorial.yml
@@ -19,7 +19,7 @@ steps:
             - BUILDKITE_S3_SECRET_ACCESS_KEY="U2FsdGVkX1+SPF81nkK7KQ64DsafSl0qq2iG7BsQs1xlTYEtZV3MqQl3l/NWaiocaEywZZFbAB5zpnKPD0xHTQ=="
             - BUILDKITE_S3_DEFAULT_REGION="U2FsdGVkX1/cORlxhXcxhja2JkqC0f8RmaGYxvGBbEg="
       - JuliaCI/julia#v1:
-          version: 1.6
+          version: 1
       - staticfloat/sandbox:
           rootfs_url: "https://jc-rootfs-images.s3.amazonaws.com/aws_uploader-2021-11-12.x86_64.tar.gz"
           rootfs_treehash: "986217e5b36efd3b3b91ed90df8e36d628cf543f"
@@ -62,7 +62,7 @@ steps:
           files:
             - .buildkite/ssh_deploy.key
       - JuliaCI/julia#v1:
-          version: 1.6
+          version: 1
       - staticfloat/sandbox:
           rootfs_url: "https://jc-rootfs-images.s3.amazonaws.com/aws_uploader-2021-11-12.x86_64.tar.gz"
           rootfs_treehash: "986217e5b36efd3b3b91ed90df8e36d628cf543f"

diff --git a/.buildkite/test_turing.yml b/.buildkite/test_turing.yml
@@ -2,10 +2,10 @@ agents:
   queue: "juliaecosystem"
 
 steps:
-  - label: ":julia: Run tests on 1.6"
+  - label: ":julia: Run tests on Julia 1 (stable)"
     plugins:
       - JuliaCI/julia#v1:
-          version: 1.6
+          version: 1
       - JuliaCI/julia-test#v1:
     timeout_in_minutes: 20
     artifact_paths:

diff --git a/.github/workflows/UpdateManifests.yml b/.github/workflows/UpdateManifests.yml
@@ -18,7 +18,7 @@ jobs:
           ssh-key: ${{ secrets.UPDATE_MANIFESTS_KEY }}
       - uses: julia-actions/setup-julia@v1
         with:
-          version: 1.6
+          version: 1
       - uses: julia-actions/cache@v1
       - name: "Update Manifest.toml files"
         run: find tutorials/ -type f -name Manifest.toml -exec julia --color=yes -e "using Pkg; Pkg.activate(dirname(ARGS[1])); Pkg.instantiate(); Pkg.update()'" {} \;

diff --git a/tutorials/00-introduction/00_introduction.jmd b/tutorials/00-introduction/00_introduction.jmd
@@ -213,7 +213,7 @@ histogram(chain)
 Now we can build our plot:
 
 ```julia; echo=false
-@assert isapprox(mean(chain, :p), 0.5; atol=0.1)
+@assert isapprox(mean(chain, :p), 0.5; atol=0.1) "Estimated mean of parameter p: $(mean(chain, :p)) - not in [0.4, 0.6]!"
 ```
 
 ```julia