ctat-LR-fusion Release v0.10.0
·
89 commits
to main
since this release
ctat-LR-fusion v0.10.0 Aug 19, 2023
- more optimization of ctat-minimap2
- bugfix to ROI definition off-by-one on acceptor site for igv-report display
- include LeftGene and RightGene columns
- added get_MAS-seq_fusion_cell_barcoding.py for supporting sc-MAS-seq analysis (single cells and long reads)
Compatible with ctat genome lib: https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/__genome_libs_StarFv1.10/
which uses STAR v2.7.8a as per: https://github.com/STAR-Fusion/STAR-Fusion/wiki/STAR-Fusion-release-and-CTAT-Genome-Lib-Compatibility-Matrix
and be sure to update your AnnotFilterRule.pm in the ctat genome lib as per: https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/__genome_libs_StarFv1.10/00__README.txt
** Download the FULL version ** as it contains all required submodules