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@TrinityCTAT

TrinityCTAT

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  1. Trinity_CTAT Trinity_CTAT Public

    116 34

  2. ctat-mutations ctat-mutations Public

    Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

    HTML 74 18

  3. CTAT-LR-fusion CTAT-LR-fusion Public

    fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

    Perl 14

  4. CTAT-VirusIntegrationFinder CTAT-VirusIntegrationFinder Public

    Python 13 5

  5. ctat-genome-lib-builder ctat-genome-lib-builder Public

    Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components

    Perl 10 2

  6. CTAT-SPLICING CTAT-SPLICING Public

    detection of cancer splicing aberrations

    Perl 8 3

Repositories

Showing 10 of 24 repositories
  • rnaseqc Public Forked from getzlab/rnaseqc

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    C++ 0 20 0 0 Updated Nov 26, 2024
  • CTAT-SPLICING Public

    detection of cancer splicing aberrations

    Perl 8 3 6 0 Updated Nov 22, 2024
  • ctat-mutations-benchmarking Public

    benchmarking utilities for ctat-mutations

    Python 1 0 0 0 Updated Oct 29, 2024
  • CTAT-LR-fusion Public

    fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

    Perl 14 0 4 0 Updated Oct 11, 2024
  • ctat-mutations Public

    Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

    HTML 74 18 44 0 Updated Jul 20, 2024
  • Python 0 0 0 0 Updated Jun 24, 2024
  • Python 13 BSD-3-Clause 5 3 1 Updated Nov 22, 2023
  • ctat-genome-lib-builder Public

    Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components

    Perl 10 BSD-3-Clause 2 10 1 Updated Oct 27, 2023
  • Trinity_CTAT Public
    116 34 3 1 Updated Sep 5, 2023
  • ctat-minimap2 Public Forked from lh3/minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    C 1 424 0 0 Updated Aug 19, 2023

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