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CTAT-LR-Fusion Release v1.0.0

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ctat-LR-fusion v1.0.0 Oct 8, 2024

  • works well for both ONT and PacBio under default params.
  • excludes alignment overlaps between gene pairs that fall within sequence-similar regions, and requires at least 25 bases (default) of exon overlap in the remaining regions.
  • excluding neighbor-overlap gene pairings and additional annotation-based filtering between phase-1 and phase-2.
  • added --FI_extra_params custom parameter to pass through STAR parameters to F
  • included option for --examine_coding_effect

Preferred ctat genome lib:
https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/GRCh38_gencode_v22_CTAT_lib_Mar012021.STAR_v2.7.11a.plug-n-play.tar.gz

** Download the FULL version ** as it contains all required submodules