ctat-LR-fusion v1.0.0 Oct 8, 2024
- works well for both ONT and PacBio under default params.
- excludes alignment overlaps between gene pairs that fall within sequence-similar regions, and requires at least 25 bases (default) of exon overlap in the remaining regions.
- excluding neighbor-overlap gene pairings and additional annotation-based filtering between phase-1 and phase-2.
- added --FI_extra_params custom parameter to pass through STAR parameters to F
- included option for --examine_coding_effect
Preferred ctat genome lib:
https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/GRCh38_gencode_v22_CTAT_lib_Mar012021.STAR_v2.7.11a.plug-n-play.tar.gz
** Download the FULL version ** as it contains all required submodules