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Improved description of tracer_path option in config file
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mstubb committed Jul 4, 2018
1 parent 103888e commit c90ab4f
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -170,7 +170,7 @@ See salmon [documentation](http://salmon.readthedocs.io/en/latest/salmon.html) f
tracer_path = /path/to/tracer

Location of the cloned TraCeR repository containing tracerlib, test_data, resources etc. Eg. `/user/software/tracer`.
Needed for localisation of resources and test_data if running TraCeR with the tracer binary.
Needed for localisation of resources and test_data if running TraCeR with the tracer binary. Note: this is the path to the **directory** and not the executable.

## Testing TraCeR
TraCeR comes with a small dataset in `test_data/` (containing only TCRA or TCRB reads for a single cell) that you can use to test your installation and config file and confirm that all the prerequisites are working. Run it as:
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2 changes: 1 addition & 1 deletion tracer.conf
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Expand Up @@ -63,5 +63,5 @@ Hsap = /path/to/kallisto/index_for_Hsap
#kmerLen = 31

[tracer_location]
#Path to where TraCeR was originally downloaded
#Path to direcetory where TraCeR was originally downloaded
tracer_path = /path/to/tracer

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