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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 316 46

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 98 11

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 60 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Jupyter Notebook 67 2

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 46 5

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 26 3

Repositories

Showing 10 of 65 repositories
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 316 MIT 46 28 0 Updated Dec 16, 2024
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Jupyter Notebook 67 MIT 2 7 0 Updated Dec 11, 2024
  • scg_lib_structs Public

    Collections of library structure and sequence of popular single cell genomic methods

    Teichlab/scg_lib_structs’s past year of commit activity
    HTML 440 94 2 0 Updated Dec 10, 2024
  • snp2cell Public

    cell type specific, trait-associated gene regulation

    Teichlab/snp2cell’s past year of commit activity
    Python 17 BSD-3-Clause 0 2 0 Updated Dec 3, 2024
  • vascular_atlas Public

    Repo with analysis code for the vascular atlas paper

    Teichlab/vascular_atlas’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Nov 22, 2024
  • thymus_spatial_atlas Public

    general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!

    Teichlab/thymus_spatial_atlas’s past year of commit activity
    Jupyter Notebook 8 2 0 0 Updated Nov 20, 2024
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 9 GPL-3.0 2 0 0 Updated Nov 20, 2024
  • gene2probe Public

    Pipeline for designing custom probes against human genes

    Teichlab/gene2probe’s past year of commit activity
    Jupyter Notebook 13 MIT 4 0 1 Updated Nov 11, 2024
  • lung-immune-cell-atlas Public

    This is a folder containing information of the human fetal lung leukocyte atlas

    Teichlab/lung-immune-cell-atlas’s past year of commit activity
    HTML 1 1 0 0 Updated Nov 7, 2024
  • TissueTag Public

    Python package to interactively annotate histological images within a jupyter notebook

    Teichlab/TissueTag’s past year of commit activity
    Jupyter Notebook 11 BSD-3-Clause 4 1 0 Updated Nov 6, 2024
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