yeast 8.6.1 #321
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yeast 8.6.1 #321
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Besides the current subsystem defined for each rxn based on kegg database. A manually curated subsystem is added for each rxn.
Add the missing subsystem information for newly added reactions. Update the column names.
Besides the current subsystem defined for each rxn based on kegg database. A manually curated subsystem is added for each rxn.
Add the missing subsystem information for newly added reactions. Update the column names.
…s/yeast-GEM into complex-annotation
…90 new transport annotations
# Conflicts: # model/dependencies.txt # model/yeast-GEM.txt # model/yeast-GEM.yml
(cherry picked from commit bbaefdb) # Conflicts: # code/modelCuration/addTransNewGPR.m # data/modelCuration/TransRxnNewGPR.tsv
…mplexAnnotationGenes"
…almers/yeast-GEM into unique_subsystem_of_rxn
…r-transport-rxns Transporter annotation for transport rxns
# Conflicts: # README.md # code/modelCuration/addDBNewGeneAnnotation.m # model/yeast-GEM.xml # model/yeast-GEM.yml
Complex annotation
# Conflicts: # README.md # code/modelCuration/addDBNewGeneAnnotation.m # model/dependencies.txt # model/yeast-GEM.xml # model/yeast-GEM.yml
feat: add 19 new GPR and consolidate curations between model releases
…f_rxn # Conflicts: # .gitignore # code/modelCuration/v8_6_0.m # model/yeast-GEM.txt # model/yeast-GEM.yml
Unique subsystem of rxn
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# Conflicts: # README.md # model/yeast-GEM.yml
mihai-sysbio
reviewed
Sep 5, 2022
| @@ -33,7 +33,7 @@ This repository contains the current consensus genome-scale metabolic model of _ | |||
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| | Taxonomy | Latest update | Version | Reactions | Metabolites | Genes | | |||
| |:-------|:--------------|:------|:------|:----------|:-----| | |||
| | _Saccharomyces cerevisiae_ | 18-May-2022 | 8.6.0 | 4069 | 2749 | 1151 | | |||
| | _Saccharomyces cerevisiae_ | 15-Jun-2022 | develop | 4063 | 2744 | 1163 | | |||
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Just wondering, is it expected to have develop here?
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Yes, new readme.md will be generated as part of making new release.
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Main improvements in this PR:
subSystemper reactions. (PR Unique subsystem of rxn #307, closes fix: subSystems field #11)modelTests. (PR Complex annotation #305, closes refactor: reduce dependencies modelTests #309)I hereby confirm that I have:
developas a target branch (top left drop-down menu)