chore-rxn: move KEGG pathway ids to proper field

after COBRA (opencobra/cobratoolbox#1604) and RAVEN (SysBioChalmers/RAVEN#313) added functionality for them
SysBioChalmers · Nov 24, 2020 · 41be91c · 41be91c
1 parent b2f3d69
commit 41be91c
Show file tree

Hide file tree

Showing 4 changed files with 17,721 additions and 10,627 deletions.
diff --git a/ComplementaryScripts/otherChanges/migrateKEGGpathways.m b/ComplementaryScripts/otherChanges/migrateKEGGpathways.m
@@ -0,0 +1,21 @@
+
+% Load Model:
+cd ..
+model = loadYeastModel;
+
+% Migrate KEGG pathways from 'subSystems' to 'rxnKEGGpathways'
+model.rxnKEGGPathways = cell(size(model.rxns));
+for i = 1:length(model.rxns)
+    KEGGPathways = model.subSystems{i};
+    for j = 1:length(KEGGPathways)
+        if ~isempty(KEGGPathways{j})
+            KEGGPathways{j} = KEGGPathways{j}(1:8);
+        end
+    end
+    model.rxnKEGGPathways{i} = strjoin(KEGGPathways,';');
+end
+model.subSystems = cell(size(model.rxns));
+
+% Save Model:
+saveYeastModel(model);
+cd otherChanges