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Fix/mito nuc trans #709

Merged
merged 12 commits into from
Oct 20, 2023
Merged

Fix/mito nuc trans #709

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df1afb8
feat: add new reactions representing transport activities of SLC25A33…
Devlin-Moyer Oct 16, 2023
d5d76ec
feat: add new gene entries for SLC25A33 and SLC25A36
Devlin-Moyer Oct 16, 2023
8e11d3a
fix: made MAR08301 reversible, associated it with SLC25A36, and updat…
Devlin-Moyer Oct 16, 2023
a7a9252
fix: removed MAR04843, MAR07823, MAR07926, and MAR09019 for being uns…
Devlin-Moyer Oct 16, 2023
37eaf10
fix: YAML formatting issue
Devlin-Moyer Oct 17, 2023
57e949a
chore: merge in latest develop branch
Devlin-Moyer Oct 17, 2023
312813e
fix: typo in metabolite ID for dTDP in MAR20162
Devlin-Moyer Oct 17, 2023
b86c4b3
fix: two of the new reactions had the same ID
Devlin-Moyer Oct 17, 2023
5b3d379
fix: forgot to add new rows to model/genes.tsv for SLC25A33 and SLC25A36
Devlin-Moyer Oct 17, 2023
402ecb6
fix: two of the new reactions were accidentally identical
Devlin-Moyer Oct 18, 2023
0526913
Merge branch 'develop' into fix/mito_nuc_trans
haowang-bioinfo Oct 19, 2023
d5a281c
fix: removed MAR20166 and renamed MAR20167 to MAR20166 cuz MAR20166 d…
Devlin-Moyer Oct 19, 2023
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4 changes: 4 additions & 0 deletions data/deprecatedIdentifiers/deprecatedReactions.tsv
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Expand Up @@ -243,6 +243,10 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx
"MAR07790" "" "FADtx" "" "" "" "FADtx" "MNXR99217" "HMR_7790" "RCR20203" "" 0 "" "" "HMR_7790"
"MAR08564" "" "KYNAKGAT" "" "" "" "KYNAKGAT" "MNXR100948" "HMR_8564" "RCR11356" "" 0 "" "" "HMR_8564"
"MAR08565" "R03445" "KYNATESYN" "" "" "" "KYNATESYN" "MNXR100949" "HMR_8565" "RCR11357" "" 0 "" "RHEA:42452" "HMR_8565"
"MAR04843" "" "" "" "r0801" "" "r0801" "MNXR105390" "HMR_4843" "RCR20168" "" 0 "" "" "HMR_4843"
"MAR09019" "" "" "" "" "" "HMR_9019" "" "HMR_9019" "RCR20242" "" 0 "" "" "HMR_9019"
"MAR07823" "" "DNDPt51m" "" "" "" "DCTPtm" "MNXR97204" "" "" "" 0 "" "" "DCTPtm"
"MAR07926" "" "DGTPtm" "" "" "" "DGTPtm" "MNXR97327" "" "" "" 0 "" "" "DGTPtm"
"MAR01483" "" "LIPOti" "" "" "" "LIPOti" "MNXR101093" "" "" "" 0 "" "" "LIPOti"
"MAR06406" "" "LIPOti" "RT1089" "" "" "" "MNXR101093" "HMR_6406" "RCR41534" "" 0 "" "" "HMR_6406"
"MAR00478" "R00844" "" "" "" "R-HSA-75889" "HMR_0478" "MNXR99876" "HMR_0478" "RCR14575" "" 0 "RHEA:11098" "RHEA:11096" "HMR_0478"
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