feat: add basic memote tests

.github/workflows/yaml-validation.yml

@@ -25,5 +25,8 @@ jobs:
           ## Return non-zero exit code on warnings as well as errors
           # strict: # optional, default is false
 
+      - name: Basic MEMOTE tests
+        run: python code/test/memoteTest.py
+
       - name: Test import with cobrapy and consistency with annotation files
-        run: python code/test/sanityCheck.py
+        run: python code/test/sanityCheck.py

code/test/memoteTest.py

@@ -0,0 +1,18 @@
+import cobra
+import memote.support.basic
+
+if __name__ == "__main__":
+    try:
+        model = cobra.io.load_yaml_model("model/Human-GEM.yml")
+
+        # Use the MEMOTE way of testing
+        # https://github.com/opencobra/memote/blob/c8bd3fe75e2d955deaec824d1e93ebe60e754710/tests/test_for_support/test_for_basic.py#L908-L909
+        rxns, num = memote.support.basic.find_duplicate_reactions(model)
+        assert num == 0, "Duplicate reactions found: {}".format(rxns)
+
+        # Make sure all reactions have at least one metabolite
+        for r in model.reactions:
+            assert len(r.metabolites) > 0, "Reaction with no metabolite found: {}".format(r.id)
+    except AssertionError as e:
+        print(e)
+        exit(1)