Update cutadapt to v4.6 (nf-core#5061)

RSC-RP · Mar 20, 2024 · 33c56a0 · 33c56a0
1 parent 1973424
commit 33c56a0
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Showing 3 changed files with 9 additions and 9 deletions.
diff --git a/modules/nf-core/cutadapt/environment.yml b/modules/nf-core/cutadapt/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::cutadapt=3.4
+  - bioconda::cutadapt=4.6
diff --git a/modules/nf-core/cutadapt/main.nf b/modules/nf-core/cutadapt/main.nf
@@ -4,8 +4,8 @@ process CUTADAPT {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/cutadapt:3.4--py39h38f01e4_1' :
-        'biocontainers/cutadapt:3.4--py39h38f01e4_1' }"
+        'https://depot.galaxyproject.org/singularity/cutadapt:4.6--py39hf95cd2a_1' :
+        'biocontainers/cutadapt:4.6--py39hf95cd2a_1' }"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/nf-core/cutadapt/tests/main.nf.test.snap b/modules/nf-core/cutadapt/tests/main.nf.test.snap