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@RSC-RP

Research Scientific Computing

We increase the impact of Seattle Children's biomedical research by making cutting-edge computational biology and supercomputing accessible

Research Scientific Computing

We increase the impact of Seattle Children’s Research Institute (SCRI) biomedical research by making cutting-edge computational biology and supercomputing accessible to Seattle Children’s Hospital (SCH)

Bioinformatics Collaboration and Consultation

The Research Scientific Computing Team takes great pleasure in offering our consultation and collaborative support to facilitate your research needs. Our team consists of distinguished computational biologists and data scientists who possess extensive expertise in various domains of biomedical research, including all major Next Generation Sequencing (NGS) methodologies, single-cell analytics, variant calling, proteomics, metabolomics, machine learning, and more. See below for details on specific areas.

General support

Along with the services described below, we stand ready to collaborate with you to take on any new technology or research challenges that may arise in your endeavors.

  • Single-cell RNA-seq Profiling and Analysis
  • Single-cell ATAC-seq or 10x Multiome Profiling and Analysis
  • RNA-seq Analysis
  • Epigenetic and Transcription factor profiling
  • Whole genome and whole exome sequencing analysis
  • Spatial Transcriptomic Analysis
  • Microbiome Analysis
  • Long-read sequencing analysis
  • Proteomic Analysis

Seattle Chilren's

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  1. .github .github Public

    Mission Statement

  2. mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq Public

    Time-course analysis of scRNA-seq from iPSC motor neurons.

    R 1

  3. sarek_Aug2023 sarek_Aug2023 Public

    Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow

  4. bulk_rnaseq_fusion_nf bulk_rnaseq_fusion_nf Public

    Jupyter Notebook 1

  5. IGNITE IGNITE Public

    repo to demo for 2023.11 IGNITE

    R

  6. rnaseq_count_nf rnaseq_count_nf Public

    HTML 1

Repositories

Showing 10 of 13 repositories
  • nextflow_scri_config Public

    An SCRI nextflow profile for NF-Core

    RSC-RP/nextflow_scri_config’s past year of commit activity
    0 MIT 0 1 0 Updated Nov 6, 2024
  • kappe_s_2022.04_PF_LiverStage Public

    Transcriptome Profiling of bulk RNA-seq from Hepatocytes infected with Plasmodium falciparum.

    RSC-RP/kappe_s_2022.04_PF_LiverStage’s past year of commit activity
    Shell 0 Artistic-2.0 0 0 0 Updated Sep 11, 2024
  • compareRhythms Public Forked from bharathananth/compareRhythms

    Approaches to identify Differential Rhythmicity

    RSC-RP/compareRhythms’s past year of commit activity
    TeX 0 GPL-3.0 5 0 0 Updated Jun 18, 2024
  • RSC-RP/rnaseq_count_nf’s past year of commit activity
    HTML 0 GPL-3.0 1 0 0 Updated May 22, 2024
  • mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq Public

    Time-course analysis of scRNA-seq from iPSC motor neurons.

    RSC-RP/mack_d_2023.04.13_iPSC_neuromuscular_scRNAseq’s past year of commit activity
    R 0 Artistic-2.0 1 0 0 Updated May 22, 2024
  • modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    RSC-RP/modules’s past year of commit activity
    Nextflow 0 MIT 739 0 0 Updated Apr 3, 2024
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    RSC-RP/configs’s past year of commit activity
    Nextflow 0 MIT 278 0 0 Updated Mar 20, 2024
  • multi-package-containers Public Forked from BioContainers/multi-package-containers

    Testing building mulled containers for multi-requirement tools.

    RSC-RP/multi-package-containers’s past year of commit activity
    0 225 0 0 Updated Mar 19, 2024
  • cutandrun_nf Public

    Cut&Run Alignment, QC, and Peak Calling Pipeline

    RSC-RP/cutandrun_nf’s past year of commit activity
    Nextflow 0 GPL-3.0 1 2 0 Updated Jan 30, 2024
  • IGNITE Public

    repo to demo for 2023.11 IGNITE

    RSC-RP/IGNITE’s past year of commit activity
    R 0 Artistic-2.0 0 0 0 Updated Jan 25, 2024

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