feat: add command to add cmd_to_add_type_site #334
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commit 70b0139 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 15:22:56 2022 +0100 style: apply black commit 2badedf Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 15:11:41 2022 +0100 chore(db): removed unused import commit 57d9b52 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 14:47:48 2022 +0100 feat(db): improved & finished downgrade func commit 211780f Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 09:32:12 2022 +0100 feat(db): wip: add upgrade and began downgrade Downgrade migration need a little bit more work due to the use of sql alchemy and not plain text sql commit 0b5a3b8 Author: Maxime Vergez <[email protected]> Date: Mon Dec 5 11:40:32 2022 +0100 feat: packaged module
Squashed commit of the following: commit 2bdc22a Author: Maxime Vergez <[email protected]> Date: Fri Dec 9 14:59:31 2022 +0100 chore: changed json_schema into config commit 4279389 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 18:37:41 2022 +0100 feat(db): add foreign key from site to cat From t_base_sites to bib_categorie_site commit 5cb5dfa Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 16:47:27 2022 +0100 feat(api): add admin interface commit 559a0ec Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 16:46:27 2022 +0100 feat(db): add bib_categorie_site table Add migration and model
* feat(api): wip began add site routes + tests With site categories Also add tests * feat(api): add more routes * test(api): add tests and fixtures * style(api): applied black * feat(db): add migration to remove id_module Column in t_sites_groups * refactor(api): move utils for routes from sites * feat(api): wip: add sites groups route * test(api): wip: begin adding fixture site_groups * fix: remove id_module in all models * chore: rename route for better consistency * tests: moved site_groups in tests and add tests * chore(api): applied black * refactor(api): add filter params function And refact routes to use it
* feat(api): add association table with alembic Add model in backend and alembic migration Reviewed-by: andriac [Refs ticket]: #3 * test: WIP add test to see new relationship Adding test to see if categories are showing up when we call module Reviewed-by: andriacap [Refs ticket]: #3 * feat: add type site - categorie relation WIP - add selectfield to get type site in admin module Reviewed-by: andriac [Refs ticket]: #3 * feat(api): Flask admin and routes categories Clean code for change label list and form selectfield for the BibCategorieView in Flask Admin Add utils routes to get all subtable relationship in order to get back the label type site Review-by: andriac [Refs ticket]: #3 * refactor: remove paginate_nested For depth in as_dict() * test: fix tests due to as_dict depth * style: applied black and isort * chore: remove unused import Co-authored-by: Andria Capai <[email protected]>
* tests: make tests and fixtures work for modules By changing the way a monitoring module is created in the fixture Add two tests to check the relationship * feat(api): add categories in edit module * style: applied black
Need to set the current working directory of pytest the directory where the gn_monitoring_module repo is (so with the frontend etc.)
clean: Merge la PR move test_route Co-authored-by: Andria Capai <[email protected]>
* feat(api): remove id_module from sites_complements Co-authored-by: andriacap <[email protected]> * feat(api): create schema for sites_groups * test: add sites_group to site fixture * test: wip add test for sites_groups schemas * chore(api): remove depth parameter from paginate * test: updated to work with sites_group schema * feat: categorie site with marshmallow Test and marshmallow create/refactor to adapt for bibcategorie site paginate WIP : Adapt load_only site_type in test to "assert" same object when initiate BibCategorieSite [Refs ticket]: #3 * feat(api): route /sites/categories/id with schema Changing the route to return a dump Marshmallow schema BibCategorieSitesSchema Reviewed-by: andriac [Refs ticket]: #3 * test(api): routes get categoires label Change the "as_dict" by schema.dump in order to use the Marshmallow schema created Reviewed-by: andriac [Refs ticket]: #3 * feat(api): Sites: cols to geoserializable + schema * style(api): applied black * test(api): add test for Site Schema * style(api): applied black to test_site * refactor(api): instantiate schema once Instead of for each all() iteration * chore(api): remove useless comments * chore(api): remove useless comments and imports Co-authored-by: andriacap <[email protected]> Co-authored-by: Andria Capai <[email protected]>
To replace it with a bib nomenclature type: TYPE_SITE
* fix(api): add int conversion for limit/offset * test(api): add test for get_limit_offset * fix(api): max_per_page => per_page & test * test(api): update test with changes on schema Since marshmallow schemas, the json returned by pagination has changed for items and not sites
* feat(api): add Query Class to sites, grps & cats * feat(api): add sort and fix _get_model Via _get_entity * test(api): test sort query * feat(api): add api sort/sort_dir params To be able to sort through REST Api * fix(api): check if integer to avoid using ilike In filter_by_params * test(api): add test to check filter integer
* Merged feat/package-module-alembic commit 70b0139 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 15:22:56 2022 +0100 style: apply black commit 2badedf Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 15:11:41 2022 +0100 chore(db): removed unused import commit 57d9b52 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 14:47:48 2022 +0100 feat(db): improved & finished downgrade func commit 211780f Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 09:32:12 2022 +0100 feat(db): wip: add upgrade and began downgrade Downgrade migration need a little bit more work due to the use of sql alchemy and not plain text sql commit 0b5a3b8 Author: Maxime Vergez <[email protected]> Date: Mon Dec 5 11:40:32 2022 +0100 feat: packaged module * Feat/edit categories module (#19) * tests: make tests and fixtures work for modules By changing the way a monitoring module is created in the fixture Add two tests to check the relationship * feat(api): add categories in edit module * style: applied black * fix(config): changed categories into items Following the change with marshmallow schemas
* feat(db): upgrade down_revision following rebase Since rebase with develop: changed the down_revision number * fix(db): fix bind params enabling downgrade Beforehand the downgrade was not possible... * refactor(db): removed cor_site_type_category * refactor(db): changed category into type in cor * refactor(db): create cor_type_site * fix(db): renamed column * refactor(api): update models to fit migrations * fix(db):change bib_categorie_site to bib_type_site Adding : cor_site_module cor_site_type revision alembic to create function and trigger in order to add bib_type_site but only with nomenclature 'TYPE_SITE' upgrade and downgrade works [Refs ticket]: #3 Reviewed-by: andriac * fix(api): updated models from migrations * fix(api): wip: fix admin following migrations * fix(api): update routes and tests To match migration changes * feat: flask admin bib_type_site Change bib_categories to bib_type_site into flask admin Adding filtering in list label_fr of type_site to secure the unique constraint Reviewed-by: andriac [Refs ticket]: #3 * fix(api): updated schema to match models * fix(api): module edition * style(api): uniformize type_site * style(api): change relationship name for type_site * feat(api): validator admin * fix(api): make unique BibTypeSite in admin * test(api): fix test when existing nomenclatures In database Co-authored-by: Andria Capai <[email protected]>
* Merged feat/package-module-alembic commit 70b0139 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 15:22:56 2022 +0100 style: apply black commit 2badedf Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 15:11:41 2022 +0100 chore(db): removed unused import commit 57d9b52 Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 14:47:48 2022 +0100 feat(db): improved & finished downgrade func commit 211780f Author: Maxime Vergez <[email protected]> Date: Tue Dec 6 09:32:12 2022 +0100 feat(db): wip: add upgrade and began downgrade Downgrade migration need a little bit more work due to the use of sql alchemy and not plain text sql commit 0b5a3b8 Author: Maxime Vergez <[email protected]> Date: Mon Dec 5 11:40:32 2022 +0100 feat: packaged module * perf(api): improved loading of modules When there are loads of datasets, the relationship takes a lot of time to load, and is useless for the route that uses it. * fix: due to wrong rebase Fix: newline on data_utils.py Fix: relationships are not joined anymore since there is no need of them Chore: update comment
* fix(api): page - 1 that returned the wrong page * test(api): add test for paginate
So that it will fallback to == most of the time and ilike when just Unicode
Cannot use alembic to do this because need sqlalchemy >= 1.4.32
* refactor(api): change offset to page * refactor(api): rename id_nomenclature * fix(admin): add compare field to Unique Since now, BibTypeSite and TNomenclature do not share the same column anymore (id_nomenclature_type_site vs id_nomenclature)
* feat(db): upgrade down_revision following rebase Since rebase with develop: changed the down_revision number * fix(db): fix bind params enabling downgrade Beforehand the downgrade was not possible... * refactor(db): removed cor_site_type_category * refactor(db): changed category into type in cor * refactor(db): create cor_type_site * fix(db): renamed column * refactor(api): update models to fit migrations * fix(db):change bib_categorie_site to bib_type_site Adding : cor_site_module cor_site_type revision alembic to create function and trigger in order to add bib_type_site but only with nomenclature 'TYPE_SITE' upgrade and downgrade works [Refs ticket]: #3 Reviewed-by: andriac * fix(api): updated models from migrations * fix(api): wip: fix admin following migrations * fix(api): update routes and tests To match migration changes * feat: flask admin bib_type_site Change bib_categories to bib_type_site into flask admin Adding filtering in list label_fr of type_site to secure the unique constraint Reviewed-by: andriac [Refs ticket]: #3 * fix(api): updated schema to match models * fix(api): module edition * style(api): uniformize type_site * style(api): change relationship name for type_site * feat(api): validator admin * fix(api): make unique BibTypeSite in admin * test(api): fix test when existing nomenclatures In database Co-authored-by: Andria Capai <[email protected]>
* test(api): test all_geometries route * feat(api): geojson instead of geobuf for sites * feat(api): add all_sites_group_geometry route To return the geometries of all sites groups * test(api): refactor fixture To add a new one: site_group_with_sites since not all sites_groups have sites * test(api): test get_sites_groups route * feat(api): add possibility to filter On id_base_site, base_site_name and id_sites_group * test(api): add fixture to get group without site
* feat(front): wip sites_groups component and svc * WIP feat(front): DataTable sites_groups - Table with specific data value (OK) - Table with sort column (OK) - Datatable , select row event and change color (wip). Reviewed-by: andriac [Refs ticket]: #4 * feat(front): Datatable format and selected row - Get and display data from group_site database (OK) - Selecting row and get id of row table (OK) Improve : - improve assign colname table outside the component (maybe into the class folder ?) Todo/next: - Filtering table - Add action column to table - refactor code by creating component for the ngx-datable in order to reuse component for other data Reviewed-by: andriac [Refs ticket]: #4 * feat(front): Filtering table (OK) Function filtering is working on each column Button filtering hide/display filter inputs (OK) TODO: - check for "help" icon and description for each column if description present - Check if multiple rows and pages if it's working Reviewed-by: andriac [Refs ticket]: #4 * feat(front): wip server pagination & filtering * feat(front): add sorting capability and fixes Fix: keep filters (sort and filters) on when changing pages Feat: remove useless id column Feat: add sorting * fix(db): change trigger to constraint (migrations) Delete the trigger and create check constraint on id_nomenclature column Reviewed-by: andriacap [Refs ticket]: #3 * refactor: Custom type Geojson and group properties Create custom type geojson and build properties into marshmallow schema according to this type of Geojson [Refs ticket]: #3 * refactor: site component with site-service add function to site.services.ts [Refs ticket]: #4 * refactor: create datatable component and service Separate of concern for all about table (service and component) and all about sites (service and component) reviewed_by: andriacap [Refs ticket]: #3 * fix: change offset to page change offset name to page for paginated Reviewed-by: andriacap [Refs ticket]: #4 * merge: merge interface and type merge site_group.service.ts delete site.service.ts add interfaces re arrange code from branch front-site-interface Reviewed-by: andriacap [Refs ticket]: #4 * feat: details properties sites groups Create properties components to display properties of sites_groups Adding route with id according to the site group selected Reviewed-by: andriacap [Refs ticket]: #4 * feat: display groups sites's child Display group site child into table and uder properties Use routing and id params to display property of groups site Create service site Add logic to check routing and child route to display reactive component properties and table Reviewed-by: andriacap [Refs ticket]: #4 * refactor(front): rename interfaces, remove classes Better types * feat(front): get all geometries For sites and sites_groups * feat(front): WIP: geojson service to create layers And features groups since geojson component accumulated layers without cleaning them... * feat(front): implemented select capability Need to refact a lot! * feat(api): add route to get one site_group by id * fix(front): too much / * feat(front): add get sites_group from id * fix(front): add possibility to provide Geometry To setMapData * refactor(front): sites and sites_groups component To extend a base component to gather the same methods at one place To use route children and router-outlet properly To add some rxjs operators To move some common interfaces/functions * fix(front): fix filters by adding baseFilters * feat: edit sitegroups Create edit-service Create observable to update object to edit according to form component Adapt function service of monitoring object to sites and sitesgroups WIP: - adapt remaining function of monitoring object inside form-component-g - create an object which inherit of patch/post/delete method with - think about object with ObjectType of sites_group , sites, observation ? , visit ? - reload properties or update data of properties table after update data Reviewed-by:andriacap [Refs_ticket]: #4 * feat: edit sitegroups Improving route 'patch' Adding reload properties when sitegroups is updated Refactoring EditService for more readability Reviewed-by: andriacap [Ref_ticket]: #4 * feat: improve edit Add method to define objectType according to service used (site or gpsite) Rewied-by: andriacap [Refs_ticket]: #4 * feat: improve rendering front "edit" and "add" Adding global object service to set object type and variable "add" or "edit" button Reviewed-by: andriacap [Refs_ticket]: #4 * feat: improving patch method object Adding service to share request patch,get in order to to re-use the service in form component according to the type pass inside the formcomponent Adding decorator errorhandler for blueprint routes Reviewed-by:andriacap [Refs_ticket]: #4 * feat: create site group method with form Route create with form component Using location pacakage to choose between edit form or init sitegroup (see to improve that) Rewiewed-by: andriacap [Refs ticket]: #4 * feat: delete site_group component Add route back Add site_group from front form component Reviewed-by:andriac [Refs_ticket]: #4 * chore(api): removed unused code * style(config): apply formatter * chore(front): removed unused code & console.log * feat(front): removed display map button As it was ugly * refactor(front): remove Object for keys As there is an Angular pipe to get keys and values Also removed console.log Removed unused code * style(front): reformat routes * refactor(front): add create component To isolate functionnalities * chore(front): remove unused services * chore(front): removed usused code * chore(api): remove string package And fix if that cannot be reached * chore(api): removed unused comment * chore(front): removed console.log and comments * chore(api): removed unused code and log --------- Co-authored-by: Andria Capai <[email protected]>
Hotfix because no compilable with no existing component and no existing function Reviewed-by: andriacap
* refactor: object.service with observable obj Change the objectType string to objectType obj in order to subscribe to multilple properties link to this object Reviewed-by: andriacap [Refs_ticket]: #40 * feat: adapt service to get config json Get fieldsName and fieldsLabel for display properties (properties component) Add logic to setItem in LocalStorage to keepLast Value of observable on reload page TODO: - [ ] see if Localstorage is really necessary with the configService used inside api-geom.service ) - [ ] adapt monitoring-form-g.component with the new service Reviewed-by: andriacap [Refs ticket]: #4 * feat: column datatable from config json Add logic into sitegroups service in order to use config json to diplay column datatable (called "display_list") Review-by: andriac [Refs ticket]: #4 * feat: adjust backend to load config json Adjust backend code to use existing code in order to load config from file json and by starting with "sites_group" Fix Media load and upload for site_group TODO: - [ ] check if config should be find from file or backend - [ ] Optimize logic backend (use generic model with class method ?) Reviewed-by: andriacap [Refs ticket]: #4 * feat: add button multiselect with filter on backend filter with params backend (new route -> see if it's possible to change that) Add button multiselect above form type site TODO: - improve Input / condition of use case of btn multiselect Reviewed-by: andriac * feat: btn multiselect option -Add @input fn , placeholder, title, paramsToFilt -Remove empty option -prevent adding from keyboard input or not including in list -Store config json into object Reviewed-by: @AndriaC [Refs-ticket]: #4 * refactor: change form-service and object-service refactor form-service add observable into object-service (WIP: futur use for refresh page ?) Rieviewed-by: andriac [Refs_ticket]: #40 * refactor: test refresh page and comportment obs refresh page seems to works with localstorage of different obj in object_service Reviewed-by: andriac * feat: dynamic form - Add: - pass config json to form.component-g.ts - add config json to this.obj and refresh form into form.component-g.ts - add css for form component to deal when long form selected -fix : - refresh page form component (this._configService.init is necessary ...) - comportment different between add or edit into form component and form service Reviewed-by: andriac [Refs_ticket]: #4 * feat: dynamic form - Correction PR Remove unused console.log Rxjs : use concatMap to avoid subscribe inside subscribe Apply: prettier and sort prettier for import ts file Reviewed-by: @AndriaC [Refs_PR]: #42 * feat: dynamic create site - Add change current-object when click "Add <object>" from datatable component - api-geom.service: change the way to init the api-geom - WIP: two subscribes in one .. (the subscription is call only once ..) - WIP : get config json from backend Reviewed-by: andriac * feat: add relationship id into sendData form site Add type_site and id_site_group to the form site Reviewed-by: andriac [Refs_ticket]: #5 et #6 * feat(back): add custom config when post site Change backend files in order to choose specific config when site is created. Reviewed-by: andriac [Refs_ticket]: #5 , #6 * fix: problem of type object when loading form Add endPoint and objectType to the observable using by the formservice in order to use _apiGeomService with good context (endPoint) [Refs_ticket]: #5 et #6 * fix: todo comments about refactoring code Add todo comment in order to don't forget what is to improve inside the code * chore(front): add comment and remove console.log * chore(api): put back old formatting * chore(api): remove useless comment * refactor(api): move and rename create_update fct * fix: put back inventor/digitiser & fix typo * chore: remove useless files Since columns are now loaded from json, they are not needed anymore in separate typescript files * chore: remove definition from sites_group.json * fix: column problem on sites * chore: remove useless comment * refactor(front): remove comment and use rxjs * chore(front): remove useless file Since class BtnMultiSelectChipClass is not used anymore * chore(front): remove useless comments/imports * style(front): applied prettier * chore(front): remove useless code * refactor(front): regroup types into an interface * style(front): applied prettier * refactor(front): inherit config-json from config --------- Co-authored-by: Andria Capai <[email protected]>
Passage à sqlalchemy 1.4 et ajout de tests
* Move create cor_type_site bib_type_site cor_module_type to geonature * Remove id_nomenclature_type_site and migrate model to GeoNature * Move t_observations to GeoNature * Rename cor_type_site to cor_site_type * Bump GeoNature
fix: unify organism_actors behavior across models
* fix: remove relative imports and unused libs * fix: remove unused modules * Add import fixture monitoring_users * Reorder imports * Black --------- Co-authored-by: Mathieu ROUDAUT <[email protected]> Co-authored-by: amandine-sahl <[email protected]>
…I#292) * fix: use table models migrated in geonature core * fix: imports in tests files * Import TNomenclature from pypnnomenclature --------- Co-authored-by: Mathieu ROUDAUT <[email protected]> Co-authored-by: amandine-sahl <[email protected]>
* Script sql de migration des permissions * Changelog
* Correction url lien vers détail site * Harmonisation popup carto
* remove silented errors when insert in synthese * add migration for trigger delete in synthese --------- Co-authored-by: amandine-sahl <[email protected]>
* allow multiple geom type * Sites avec plusieurs type de géométrie par défaut --------- Co-authored-by: amandine-sahl <[email protected]>
* Fix : migration modification for permissions
* Harmonisation des processus d'exécution de sql * Add test forbidden sql instructions
Reviewed-by: andriac
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Ajout de commande pour ajouter les types de sites (même principe que nomenclatures)
Reviewed-by: andriac