Updated fasta_gxf_busco_plot

Plant-Food-Research-Open · Nov 20, 2024 · 74323eb · 74323eb
1 parent c3136b6
commit 74323eb
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Showing 4 changed files with 34 additions and 11 deletions.
diff --git a/modules.json b/modules.json
@@ -106,7 +106,7 @@
                     },
                     "fasta_gxf_busco_plot": {
                         "branch": "main",
-                        "git_sha": "7bf6fbca23edc94490ffa6709f52b2f71c6fb130",
+                        "git_sha": "5b401d806f8d69599ae88422064aea4f0e432a09",
                         "installed_by": ["subworkflows"]
                     },
                     "gxf_fasta_agat_spaddintrons_spextractsequences": {

diff --git a/subworkflows/gallvp/fasta_gxf_busco_plot/main.nf b/subworkflows/gallvp/fasta_gxf_busco_plot/main.nf
@@ -166,4 +166,3 @@ workflow FASTA_GXF_BUSCO_PLOT {
     annotation_png                              = ch_annotation_png                     // channel: [ png ]
     versions                                    = ch_versions                           // channel: [ versions.yml ]
 }
-
diff --git a/subworkflows/gallvp/fasta_gxf_busco_plot/meta.yml b/subworkflows/gallvp/fasta_gxf_busco_plot/meta.yml
@@ -64,6 +64,12 @@ output:
         Channel containing BUSCO short summaries corresponding to fasta files
         Structure: [ val(meta), json ]
       pattern: "*.json"
+  - assembly_plot_summary_txt:
+      type: file
+      description: |
+        Channel containing BUSCO short summaries corresponding to fasta files renamed to include lineage in sample id
+        Structure: [ txt ]
+      pattern: "*.txt"
   - assembly_png:
       type: file
       description: |
@@ -88,6 +94,12 @@ output:
         Channel containing BUSCO short summaries corresponding to annotation files
         Structure: [ val(meta), json ]
       pattern: "*.json"
+  - annotation_plot_summary_txt:
+      type: file
+      description: |
+        Channel containing BUSCO short summaries corresponding to annotation files renamed to include lineage in sample id
+        Structure: [ txt ]
+      pattern: "*.txt"
   - annotation_png:
       type: file
       description: |

diff --git a/subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test.snap b/subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test.snap
@@ -38,6 +38,11 @@
                 ],
                 "1": [
 
+                ],
+                "10": [
+                    "versions.yml:md5,36b11c442943567e471af0abd474a10b",
+                    "versions.yml:md5,9435355f913e283f60b4fb7ef77dd52a",
+                    "versions.yml:md5,e9d65e2f2f13175e99c5b7f4ae1013b9"
                 ],
                 "2": [
 
@@ -46,6 +51,9 @@
 
                 ],
                 "4": [
+
+                ],
+                "5": [
                     [
                         {
                             "id": "test",
@@ -62,9 +70,6 @@
                         },
                         "test-bacteria_odb10-busco.batch_summary.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
-                ],
-                "5": [
-
                 ],
                 "6": [
 
@@ -73,9 +78,10 @@
 
                 ],
                 "8": [
-                    "versions.yml:md5,36b11c442943567e471af0abd474a10b",
-                    "versions.yml:md5,9435355f913e283f60b4fb7ef77dd52a",
-                    "versions.yml:md5,e9d65e2f2f13175e99c5b7f4ae1013b9"
+
+                ],
+                "9": [
+
                 ],
                 "annotation_batch_summary": [
                     [
@@ -94,6 +100,9 @@
                         },
                         "test-bacteria_odb10-busco.batch_summary.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
+                ],
+                "annotation_plot_summary_txt": [
+
                 ],
                 "annotation_png": [
 
@@ -137,6 +146,9 @@
                         },
                         "test2-bacteria_odb10-busco.batch_summary.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
+                ],
+                "assembly_plot_summary_txt": [
+
                 ],
                 "assembly_png": [
 
@@ -155,10 +167,10 @@
             }
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nf-test": "0.9.0",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-05-13T16:39:45.021811"
+        "timestamp": "2024-11-20T14:04:28.17169"
     },
     "candidatus_portiera_aleyrodidarum - bacteroides_fragilis - genome": {
         "content": [
Original file line number	Diff line number	Diff line change
Expand Up		@@ -166,4 +166,3 @@ workflow FASTA_GXF_BUSCO_PLOT {
		annotation_png = ch_annotation_png // channel: [ png ]
		versions = ch_versions // channel: [ versions.yml ]
		}