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Merge pull request #183 from NeuroML/development
NeuroML 2.2 release
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LEMSexamples/regression-tests/LEMS_NML2_Ex5_DetCell_unformatted.xml
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<Lems><!-- Example with Simple cell specifying segment details--><!-- This is a file which can be read and executed by the LEMS Interpreter. It imports the LEMS definitions of the core NeuroML 2 Components, imports in "pure" NeuroML 2 and contains some LEMS elements for running a simulation --><Target component="sim1" reportFile="report.ex5.txt"/><Include file="Cells.xml"/><Include file="Networks.xml"/><Include file="Simulation.xml"/><!-- Including file with a <neuroml>root, a "real" NeuroML 2 file --><Include file="../examples/NML2_SingleCompHHCell.nml"/><Simulation id="sim1" length="300ms" step="0.01ms" target="net1"><Display id="d1" title="Ex5: HH cell with simple morphology: voltage" timeScale="1ms" xmin="0" xmax="300" ymin="-90" ymax="50"><Line id="v" quantity="hhpop[0]/v" scale="1mV" color="#cccccc" timeScale="1ms"/><Line id="spiking" quantity="hhpop[0]/spiking" scale="0.1V" color="#004040" timeScale="1ms"/><!--<Line id="l3" quantity="hhpop[0]/debugVal" scale="1V" color="#999999" timeScale="1ms"/>--></Display><Display id="d2" title="Ex5: HH cell with simple morphology: rate variables" timeScale="1ms" xmin="0" xmax="300" ymin="-0.1" ymax="1.1"><Line id="m" quantity="hhpop[0]/bioPhys1/membraneProperties/naChans/naChan/m/q" scale="1" color="#000000" timeScale="1ms"/><Line id="h" quantity="hhpop[0]/bioPhys1/membraneProperties/naChans/naChan/h/q" scale="1" color="#ff0000" timeScale="1ms"/><Line id="n" quantity="hhpop[0]/bioPhys1/membraneProperties/kChans/kChan/n/q" scale="1" color="#0000ff" timeScale="1ms"/></Display><Display id="d3" title="Ex5: HH cell with simple morphology: current densities" timeScale="1ms" xmin="0" xmax="300" ymin="-0.1" ymax="1.1"><Line id="ina" quantity="hhpop[0]/bioPhys1/membraneProperties/naChans/iDensity" scale="1" color="#000000" timeScale="1ms"/><Line id="ik" quantity="hhpop[0]/bioPhys1/membraneProperties/kChans/iDensity" scale="1" color="#ff0000" timeScale="1ms"/></Display><Display id="d4" title="Ex5: HH cell with simple morphology: conductance densities" timeScale="1ms" xmin="0" xmax="300" ymin="-50" ymax="350"><Line id="gna" quantity="hhpop[0]/bioPhys1/membraneProperties/naChans/gDensity" scale="1" color="#000000" timeScale="1ms"/><Line id="gk" quantity="hhpop[0]/bioPhys1/membraneProperties/kChans/gDensity" scale="1" color="#ff0000" timeScale="1ms"/></Display><OutputFile id="of0" fileName="results/ex5_v.dat"><OutputColumn id="v" quantity="hhpop[0]/v"/></OutputFile><OutputFile id="of1" fileName="results/ex5_vars.dat"><OutputColumn id="m" quantity="hhpop[0]/bioPhys1/membraneProperties/naChans/naChan/m/q"/><OutputColumn id="h" quantity="hhpop[0]/bioPhys1/membraneProperties/naChans/naChan/h/q"/><OutputColumn id="n" quantity="hhpop[0]/bioPhys1/membraneProperties/kChans/kChan/n/q"/></OutputFile></Simulation></Lems> |
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Temporary folder for the results of simulations run with LEMS |
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