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34 Open 98 Closed
34 Open 98 Closed
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Issues list

Combining segmented AOIs into single ROI
#204 opened Dec 16, 2024 by bkinnersley
1
Incompatibility with Updated LabWorksheet Format from GeoMx DSP Control Center v3.1.0.222
#203 opened Dec 9, 2024 by EmanuelSoda
1
Running mixmodelDE with more complex design
#202 opened Dec 6, 2024 by bl24
1
Issue reading .dcc files into R
#199 opened Aug 27, 2024 by ava-amidei
1
Error running aggregateCount
#198 opened Jul 22, 2024 by jonoave
1
Merge two (or more) GeoMxSet objects
#197 opened Apr 27, 2024 by shaniAmare
1
QC questions
#196 opened Apr 23, 2024 by slzhao
1
Error coercing GeoMx data to Seurat object
#191 opened Oct 30, 2023 by generalshermanw
1
6
Prepare for upcoming Seurat v5 release
#190 opened Oct 3, 2023 by Gesmira
1
mixedModelDE failed to converage
#189 opened Sep 30, 2023 by ydai3
1
Handle older assay IDs
#185 opened Apr 26, 2023 by andrewrech
1
5
mixedModelDE does not work with a continuous predictor enhancement New feature or request
#182 opened Jan 26, 2023 by lardenoije
2
LabWorksheet pre-processing unclear
#181 opened Oct 11, 2022 by mgrout81
labworksheet read in enhancement New feature or request
#175 opened Aug 4, 2022 by maddygriz
error checking with proteogenomics data bioc3.16
#170 opened May 10, 2022 by maddygriz
1
1
Documentation updates 3.16
#169 opened May 2, 2022 by NicoleEO
1 task
Update base package bioc3.16
#148 opened Mar 24, 2022 by NicoleEO
15 tasks
@NicoleEO
Extract NCSLC dataset from SpatialDecon and make as data package enhancement New feature or request
#141 opened Jan 28, 2022 by maddygriz
mixedModelDE is only for mixed models documentation Improvements or additions to documentation enhancement New feature or request
#138 opened Nov 17, 2021 by NicoleEO
4 tasks
3
Check annotation column names
#132 opened Oct 21, 2021 by NicoleEO
1 task
1
Additional methods to extend to GeoMxSet
#124 opened Sep 9, 2021 by NicoleEO
2 tasks
NTCs not saved during writeNanoStringGeoMxSet
#123 opened Sep 9, 2021 by maddygriz
calculate LOQ by panel
#91 opened Jul 23, 2021 by JasonWReeves
3 tasks
@NicoleEO
Consider changing dimLabels
#76 opened Jun 25, 2021 by NicoleEO
add target groups to feature data
#75 opened Jun 25, 2021 by NicoleEO
ProTip! What’s not been updated in a month: updated:<2024-12-21.