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rethink use of /nbhome for cloning mom6 #4

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nikizadehgfdl opened this issue Oct 27, 2014 · 7 comments
Closed

rethink use of /nbhome for cloning mom6 #4

nikizadehgfdl opened this issue Oct 27, 2014 · 7 comments

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@nikizadehgfdl
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/nbhome/$USER is limited to 10GB and can easily fill up and when that happens the analysis scripts will fail.
I already went over quota on /nbhome because of the figures and the following items even though I do not have too many files there. I imagine this is going to be a problem for real model runners.

  • Some analysis tool try to build (MIDAS) libraries in that space.
  • Some analysis scripts (TS_depth_integrals.py) save larger .nc files in analysis figure destination in addition to small .png.

Can we try /ptmp instead?
@jkrasting
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I can provide evidence that I already have 25+ GB of CM4i analysis in
/nbhome and I've hit my quota.

Dr. John Krasting
Physical Scientist (NOAA Federal)
NOAA/Geophysical Fluid Dynamics Laboratory
Biogeochemistry, Ecosystems, and Climate Group
Princeton University Forrestal Campus
201 Forrestal Road
Princeton, NJ 08540

P. (609) 452-5359
F. (609) 987-5063

On Mon, Oct 27, 2014 at 6:41 PM, Niki Zadeh [email protected]
wrote:

/nbhome/$USER is limited to 10GB and can easily fill up and when that
happens the analysis scripts will fail.
I already went over quota on /nbhome because of the figures and the
following items even though I do not have too many files there. I imagine
this is going to be a problem for real model runners.

Some analysis tool try to build (MIDAS) libraries in that space.

Some analysis scripts (TS_depth_integrals.py) save larger .nc files in
analysis figure destination in addition to small .png.

Can we try /ptmp instead?

—
Reply to this email directly or view it on GitHub
#4.

adcroft added a commit that referenced this issue Oct 29, 2014
@adcroft
Added fake Makefile targets for analysis
8449541 
- The new "frepp_locaL" target allows frepp to build and install "local"
  from MIDAS only once and then clean up everything to save space.
- Updated MIDAS to mjharriso/MIDAS@100e06b.
- Addresses #4 (concerning use of /nbhome).
@adcroft
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adcroft commented Nov 6, 2014

Should we add a cleanup of the .nc files to the TS_depth_integrals.py script?

@nikizadehgfdl
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Yes.
Also, one way to save space on /nbhome is to put mom6 clone (or anything not needed "permanently") in /ptmp and link it to /nbhome for any given experiment (I have tested that out of necessity since my /nbhome kept filling up).

@adcroft
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adcroft commented Sep 4, 2015

Is this still an issue?

@adcroft
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adcroft commented Sep 25, 2015

This also relates to #25 (+x permissions of gcp'd scripts).

The reason we need particular versions of the analysis scripts is they can/do/will evolve with the code and diag_tables. I agree, however, that it is very wasteful to be installing MOM6-examples for each run. Here's some break downs:

  • A simple clone of MOM6-examples uses 100Mb.
  • The .git/ directory accounts for 64Mb of the 100Mb.
  • A recursive clone uses a total of 170Mb, which includes all the above.
  • The footprint in /nbhome is actually 200Mb because the analysis scripts are building MIDAS (object files etc) in there (MIDAS needs to be version'd so can't live elsewhere).

We can reduce the footprint by an order of magnitude by doing a sparse clone but this is a little involved. 👎

Here's a different suggestion: IF we knew the commit id used in the remote repository (think tag) then instead of cloning/copying to the experiment we could clone to /nbhome/$user/mom/<id> so that there is only one copy per user for all their experiments using the same tag/source. Bonnie runs dozens of runs per tag so the above saves an order of magnitude. 👍

I think the question then becomes how to get the commit id or tag back to GFDL from the remote platform. I believe you said that FRE does not know it at the frepp stage? Which is why you have to gcp the entire directory? If so, then here's an alternative way to get the tag, still using gcp but this time only transferring 41bytes: gcp <path_to_mom>/.git/HEAD gfdl:/<nbhome_path_to_expt>/HEAD and then use the contents of HEAD to check for the existence of /nbhome/$user/mom/dev/master/2015.09.21a/. If missing, clone MOM6-examples into it.

In the .frepp files, we have

set script_dir = ${out_dir}/mom6/tools/analysis

which would need to become

set mom_dir = `cat ${out_dir}/HEAD`
set script_dir = /nbhome/$user/mom/${mom_dir}/mom6/tools/analysis

🍰 (As in "piece of" - I can't find an emoji for :Genius!:)

@nikizadehgfdl
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Most of the space is used up by the analysis figures, mom6 clone takes only a minute part.
This is really a workflow issue and not a MOM6 issue. It is more about finding a permanent home for the analysis figures.
E.g., a 60 year run takes almost 10G of space (even after .nc files are removed) with mom6 clone being only 178M.

I think we can close this ticket.

/nbhome/Niki.Zadeh/ulm_201505_awg_v20150702_mom6sis2_2015.08.06b_ncrc2.intel15/CM4_c96L32_am4g5r2_2000_sis2_low_mixing3 % 

216M    atmos_0001_0005                                                                                                                
194M    atmos_0001_0010                                                                                                                
199M    atmos_0001_0015                                                                                                                
1.1G    atmos_0001_0020                                                                                                                
209M    atmos_0001_0025                                                                                                                
214M    atmos_0001_0030                                                                                                                
219M    atmos_0001_0035                                                                                                                
223M    atmos_0001_0040                                                                                                                
227M    atmos_0001_0045                                                                                                                
232M    atmos_0001_0050                                                                                                                
236M    atmos_0001_0055                                                                                                                
237M    atmos_0001_0060                                                                                                                
25M     atmos_0006_0010                                                                                                                
25M     atmos_0011_0015                                                                                                                
25M     atmos_0016_0020                                                                                                                
25M     atmos_0021_0025                                                                                                                
849M    atmos_0021_0040                                                                                                                
25M     atmos_0026_0030                                                                                                                
17M     atmos_0031_0035                                                                                                                
17M     atmos_0036_0040                                                                                                                
17M     atmos_0041_0045                                                                                                                
1.1G    atmos_0041_0060                                                                                                                
17M     atmos_0046_0050                                                                                                                
17M     atmos_0051_0055                                                                                                                
17M     atmos_0056_0060                                                                                                                
3.7M    atw_atmos_av_annual                                                                                                            
2.4G    atw_atmos_ts_monthly                                                                                                           
439M    cvdp                                                                                                                           
804K    db                                                                                                                             
532K    ice_0001_0005                                                                                                                  
528K    ice_0001_0010                                                                                                                  
528K    ice_0001_0015                                                                                                                  
524K    ice_0001_0040                                                                                                                  
524K    ice_0001_0045                                                                                                                  
524K    ice_0001_0050                                                                                                                  
524K    ice_0001_0055                                                                                                                  
524K    ice_0001_0060                                                                                                                  
528K    ice_0021_0040                                                                                                                  
364K    kap_land_0001_0005                                                                                                             
364K    kap_land_0001_0010                                                                                                             
368K    kap_land_0001_0015                                                                                                             
196M    kap_land_0001_0020                                                                                                             
380K    kap_land_0001_0025
376K    kap_land_0001_0030
380K    kap_land_0001_0035
380K    kap_land_0001_0040
388K    kap_land_0001_0045
388K    kap_land_0001_0050
388K    kap_land_0001_0055
388K    kap_land_0001_0060
196M    kap_land_0021_0040
196M    kap_land_0041_0060
2.3M    mdt_xml
178M    mom6
6.9M    ocean_0001-0005
6.8M    ocean_0001-0020
7.0M    ocean_0006-0010
6.5M    ocean_0011-0015
7.5M    ocean_0016-0020
7.5M    ocean_0021-0025
6.9M    ocean_0021-0040
7.5M    ocean_0026-0030
7.5M    ocean_0031-0035
7.5M    ocean_0036-0040
7.5M    ocean_0041-0045
6.9M    ocean_0041-0060
7.5M    ocean_0046-0050
7.5M    ocean_0051-0055
7.5M    ocean_0056-0060
1.2M    ocean_monthly_0001_0005
1.2M    ocean_monthly_0001_0020
1.2M    ocean_monthly_0006_0010
1.2M    ocean_monthly_0011_0015
1.2M    ocean_monthly_0016_0020
1.2M    ocean_monthly_0021_0025
1.2M    ocean_monthly_0021_0040
1.2M    ocean_monthly_0026_0030
12K     ocean_monthly_0031_0035
1.2M    ocean_monthly_0036_0040
1.2M    ocean_monthly_0041_0045
1.2M    ocean_monthly_0041_0060
1.2M    ocean_monthly_0046_0050
1.2M    ocean_monthly_0051_0055
1.2M    ocean_monthly_0056_0060
8.9M    refineDiag_ocean_annual

@adcroft
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adcroft commented Sep 25, 2015

Done

@adcroft adcroft closed this as completed Sep 25, 2015
@adcroft adcroft mentioned this issue Sep 25, 2015
Open
adcroft added a commit that referenced this issue Aug 17, 2017
@adcroft
MOM6: Merge pull request #578 from NCAR/dev/ncar
8b801de 
- NOAA-GFDL/MOM6@ae22a0f Merge pull request #578 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@f4f882f Merge pull request #23 from gustavo-marques/combine_mct_modules
- NOAA-GFDL/MOM6@a85b728 Merge MCT modules
- NOAA-GFDL/MOM6@ba5b5ba Merge pull request #22 from gustavo-marques/check_fluxes
- NOAA-GFDL/MOM6@f5a8483 Adds option to write restart files
- NOAA-GFDL/MOM6@8745b4b Fills additional IOB fluxes
- NOAA-GFDL/MOM6@f6b22ff Merge branch 'dev/ncar' into check_fluxes
- NOAA-GFDL/MOM6@369d5d6 Merge pull request #21 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@2582e0a Adds run paramaters to control SW decomposition
- NOAA-GFDL/MOM6@58f78b9 Fill IOB, some fluxes still need to be checked
- NOAA-GFDL/MOM6@06a30ab Fixed clock and timing
- NOAA-GFDL/MOM6@1bca79b Merge pull request #20 from gustavo-marques/fix_merge
- NOAA-GFDL/MOM6@fb89b08 Adds code that got lost during merge
- NOAA-GFDL/MOM6@7480492 Merge pull request #19 from gustavo-marques/new_merge
- NOAA-GFDL/MOM6@be1e6cf Merge branch 'dev/master' into dev/ncar
- NOAA-GFDL/MOM6@76565cb Merge pull request #17 from gustavo-marques/fix_ssh_slopes
- NOAA-GFDL/MOM6@c04f081 Fix ssh slope calculation
- NOAA-GFDL/MOM6@17d4586 Merge pull request #16 from adcroft/ncar-cherry-picked-fixes
- NOAA-GFDL/MOM6@be46fee (*)Fixes gprime(1) when no layer coordinates are set
- NOAA-GFDL/MOM6@fccb7ae Avoids a SEGV when OBC are not in use with bi-harmonic friction
- NOAA-GFDL/MOM6@f42c970 Merge pull request #15 from gustavo-marques/small_fixes
- NOAA-GFDL/MOM6@31787c2 Adds reference to set_time that was lost during a conflict handling
- NOAA-GFDL/MOM6@d77936e Fix intent(inout) in ice_ocean_boundary
- NOAA-GFDL/MOM6@b403edd Merge pull request #14 from gustavo-marques/docs
- NOAA-GFDL/MOM6@4d346ca Merge branch 'dev/ncar' into docs
- NOAA-GFDL/MOM6@f7c26a5 Clean the module and start doxygenizing it
- NOAA-GFDL/MOM6@cd58e2a Merge pull request #13 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@37a53bc reorganize file structure
- NOAA-GFDL/MOM6@e6c5ddd Merge pull request #12 from gustavo-marques/fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@6b6289a Remove trailing whitespace
- NOAA-GFDL/MOM6@7ce40e5 Fix undefined reference to fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@d517719 Merge branch 'dev/ncar' into fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@b69ab33 Filling ice_ocean_bnd - Draft
- NOAA-GFDL/MOM6@a306c90 Merge pull request #11 from adcroft/use-ocn-public-for-surface
- NOAA-GFDL/MOM6@c83e238 Correct indexing when using ocean_public_type
- NOAA-GFDL/MOM6@1f39c84 Replaces use of "surface" with "ocean_public_type"
- NOAA-GFDL/MOM6@5cd8d7a Filling ice_ocean_bnd, still needs work
- NOAA-GFDL/MOM6@3ceef26 Merge pull request #10 from adcroft/sketch-out-mct-run
- NOAA-GFDL/MOM6@714e8d6 Adds placeholders for stepping foward MOM
- NOAA-GFDL/MOM6@7f2207c Merge pull request #7 from adcroft/fix-mct-whitespace
- NOAA-GFDL/MOM6@a1db77f Cleans up white space
- NOAA-GFDL/MOM6@5700d67 Merge pull request #6 from adcroft/add-use-only-for-imports
- NOAA-GFDL/MOM6@beac3ed Adds "only" for all use statements
- NOAA-GFDL/MOM6@231d19e Merge pull request #5 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@3a923a2 Got initialization working
- NOAA-GFDL/MOM6@8b38141 Wrapped global data
- NOAA-GFDL/MOM6@970f848 added debugging
- NOAA-GFDL/MOM6@2540ed8 Filled empty subroutines in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@ed3ed30 Added ocn_import_export module
- NOAA-GFDL/MOM6@aba7dc2 Completed ocn_init_mct
- NOAA-GFDL/MOM6@5df3bc3 Added method to point ponters to members of ocean_state_type
- NOAA-GFDL/MOM6@57e6086 Added methods to return domain/grid shape
- NOAA-GFDL/MOM6@37e7356 Added ocn_import_export.F90
- NOAA-GFDL/MOM6@2b794da Merge pull request #4 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@fbd405b Added coupler indices module
- NOAA-GFDL/MOM6@fa86163 Merge pull request #3 from NCAR/dev/gfdl
- NOAA-GFDL/MOM6@e8f2999 Merge pull request #2 from gustavo-marques/temp_salt_z_init_file
- NOAA-GFDL/MOM6@86936ba Adds option to read initial temp and salt from separate files
- NOAA-GFDL/MOM6@54f7976 Most initialization working
- NOAA-GFDL/MOM6@426357c Time and calendar initialization in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@346097d Moved blank ocn_comp_mct.F90
- NOAA-GFDL/MOM6@405fecb Merge pull request #1 from gustavo-marques/ice_shelf
- NOAA-GFDL/MOM6@711a613 Removes frazil's contribution to evaporation
adcroft added a commit that referenced this issue Aug 17, 2017
@adcroft
MOM6: Merge branch 'dev/master' into dev/gfdl
3f17d14 
- Updates MOM_parameter_doc files.

- NOAA-GFDL/MOM6@cde6d3f Merge branch 'dev/master' into dev/gfdl
- NOAA-GFDL/MOM6@ae22a0f Merge pull request #578 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@f4f882f Merge pull request #23 from gustavo-marques/combine_mct_modules
- NOAA-GFDL/MOM6@a85b728 Merge MCT modules
- NOAA-GFDL/MOM6@ba5b5ba Merge pull request #22 from gustavo-marques/check_fluxes
- NOAA-GFDL/MOM6@f5a8483 Adds option to write restart files
- NOAA-GFDL/MOM6@8745b4b Fills additional IOB fluxes
- NOAA-GFDL/MOM6@f6b22ff Merge branch 'dev/ncar' into check_fluxes
- NOAA-GFDL/MOM6@369d5d6 Merge pull request #21 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@2582e0a Adds run paramaters to control SW decomposition
- NOAA-GFDL/MOM6@58f78b9 Fill IOB, some fluxes still need to be checked
- NOAA-GFDL/MOM6@06a30ab Fixed clock and timing
- NOAA-GFDL/MOM6@1bca79b Merge pull request #20 from gustavo-marques/fix_merge
- NOAA-GFDL/MOM6@fb89b08 Adds code that got lost during merge
- NOAA-GFDL/MOM6@7480492 Merge pull request #19 from gustavo-marques/new_merge
- NOAA-GFDL/MOM6@be1e6cf Merge branch 'dev/master' into dev/ncar
- NOAA-GFDL/MOM6@76565cb Merge pull request #17 from gustavo-marques/fix_ssh_slopes
- NOAA-GFDL/MOM6@c04f081 Fix ssh slope calculation
- NOAA-GFDL/MOM6@17d4586 Merge pull request #16 from adcroft/ncar-cherry-picked-fixes
- NOAA-GFDL/MOM6@be46fee (*)Fixes gprime(1) when no layer coordinates are set
- NOAA-GFDL/MOM6@fccb7ae Avoids a SEGV when OBC are not in use with bi-harmonic friction
- NOAA-GFDL/MOM6@f42c970 Merge pull request #15 from gustavo-marques/small_fixes
- NOAA-GFDL/MOM6@31787c2 Adds reference to set_time that was lost during a conflict handling
- NOAA-GFDL/MOM6@d77936e Fix intent(inout) in ice_ocean_boundary
- NOAA-GFDL/MOM6@b403edd Merge pull request #14 from gustavo-marques/docs
- NOAA-GFDL/MOM6@4d346ca Merge branch 'dev/ncar' into docs
- NOAA-GFDL/MOM6@f7c26a5 Clean the module and start doxygenizing it
- NOAA-GFDL/MOM6@cd58e2a Merge pull request #13 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@37a53bc reorganize file structure
- NOAA-GFDL/MOM6@e6c5ddd Merge pull request #12 from gustavo-marques/fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@6b6289a Remove trailing whitespace
- NOAA-GFDL/MOM6@7ce40e5 Fix undefined reference to fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@d517719 Merge branch 'dev/ncar' into fill_ice_ocean_bnd
- NOAA-GFDL/MOM6@b69ab33 Filling ice_ocean_bnd - Draft
- NOAA-GFDL/MOM6@a306c90 Merge pull request #11 from adcroft/use-ocn-public-for-surface
- NOAA-GFDL/MOM6@c83e238 Correct indexing when using ocean_public_type
- NOAA-GFDL/MOM6@1f39c84 Replaces use of "surface" with "ocean_public_type"
- NOAA-GFDL/MOM6@5cd8d7a Filling ice_ocean_bnd, still needs work
- NOAA-GFDL/MOM6@3ceef26 Merge pull request #10 from adcroft/sketch-out-mct-run
- NOAA-GFDL/MOM6@714e8d6 Adds placeholders for stepping foward MOM
- NOAA-GFDL/MOM6@7f2207c Merge pull request #7 from adcroft/fix-mct-whitespace
- NOAA-GFDL/MOM6@a1db77f Cleans up white space
- NOAA-GFDL/MOM6@5700d67 Merge pull request #6 from adcroft/add-use-only-for-imports
- NOAA-GFDL/MOM6@beac3ed Adds "only" for all use statements
- NOAA-GFDL/MOM6@231d19e Merge pull request #5 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@3a923a2 Got initialization working
- NOAA-GFDL/MOM6@8b38141 Wrapped global data
- NOAA-GFDL/MOM6@970f848 added debugging
- NOAA-GFDL/MOM6@2540ed8 Filled empty subroutines in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@ed3ed30 Added ocn_import_export module
- NOAA-GFDL/MOM6@aba7dc2 Completed ocn_init_mct
- NOAA-GFDL/MOM6@5df3bc3 Added method to point ponters to members of ocean_state_type
- NOAA-GFDL/MOM6@57e6086 Added methods to return domain/grid shape
- NOAA-GFDL/MOM6@37e7356 Added ocn_import_export.F90
- NOAA-GFDL/MOM6@2b794da Merge pull request #4 from alperaltuntas/dev/ncar
- NOAA-GFDL/MOM6@fbd405b Added coupler indices module
- NOAA-GFDL/MOM6@fa86163 Merge pull request #3 from NCAR/dev/gfdl
- NOAA-GFDL/MOM6@e8f2999 Merge pull request #2 from gustavo-marques/temp_salt_z_init_file
- NOAA-GFDL/MOM6@86936ba Adds option to read initial temp and salt from separate files
- NOAA-GFDL/MOM6@54f7976 Most initialization working
- NOAA-GFDL/MOM6@426357c Time and calendar initialization in ocn_comp_mct.F90
- NOAA-GFDL/MOM6@346097d Moved blank ocn_comp_mct.F90
- NOAA-GFDL/MOM6@405fecb Merge pull request #1 from gustavo-marques/ice_shelf
- NOAA-GFDL/MOM6@711a613 Removes frazil's contribution to evaporation
ashao pushed a commit to ashao/MOM6-examples that referenced this issue Oct 3, 2017
@jkrasting
Merge pull request NOAA-GFDL#4 from ashao/add_wmo_to_refine_diag
b979772 
Include wmo as part of refine diags
adcroft pushed a commit that referenced this issue Oct 1, 2018
@jkrasting
Merge pull request #4 from StephenGriffies/dev/gfdl
e18e50f 
Update diag_table.MOM6
adcroft added a commit that referenced this issue Oct 5, 2018
@adcroft
MOM6: Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' in…
585b9ce 
…to dev/master

PR from NCAR:
- NOAA-GFDL/MOM6@c77ad425c Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' into dev/master
- NOAA-GFDL/MOM6@c09a6611a Merge pull request #4 from alperaltuntas/bkgnd_mixing_fix
- NOAA-GFDL/MOM6@3666d609d read prandtl_bknd for all cases
- NOAA-GFDL/MOM6@4306feb4b  end if to endif and end do to enddo
- NOAA-GFDL/MOM6@3714a3955 un-indent subroutines
- NOAA-GFDL/MOM6@caec6dd27 read prandtl_bkgnd only for cvmix or horiz_varying_background
- NOAA-GFDL/MOM6@f91944488 fix divide by error if Kd=0.0
- NOAA-GFDL/MOM6@67b041352 Merge pull request #4 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@bf44b18b5 Merge branch 'dev/master' into dev-ncar-candidate-2018-09-26
- NOAA-GFDL/MOM6@bcb195a83 Merge pull request #80 from gustavo-marques/pass_OBLD_caps
- NOAA-GFDL/MOM6@6f6f92a51 Change melt potential from time accumulated to instantaneous
- NOAA-GFDL/MOM6@9f0676e83 Copy Hml into sfc_state, so that caps can access it
- NOAA-GFDL/MOM6@6ccd94c73 Pass Hml, from ePBL or KPP, via a call to diabatic
- NOAA-GFDL/MOM6@405061779 Add OBLD into MCT cap
- NOAA-GFDL/MOM6@1ced255e0 Merge pull request #78 from gustavo-marques/update_melt_potential
- NOAA-GFDL/MOM6@d32386dc5 Allocates visc%MLD when hfreeze >= 0.0
- NOAA-GFDL/MOM6@ddccc44c9 Copy OBLD to visc%MLD when using KPP
- NOAA-GFDL/MOM6@d3d8215bd Add a new implementation for the melt potential calculation
- NOAA-GFDL/MOM6@f1445de5f Add option to use melt potential in mct and couple_driver
- NOAA-GFDL/MOM6@9c8b3c5da Comment DEBUG message
- NOAA-GFDL/MOM6@b7d83affc Merge pull request #73 from alperaltuntas/horiz_varying_background
- NOAA-GFDL/MOM6@4a7de48ad Merge pull request #77 from gustavo-marques/add_melt_potential_mct
- NOAA-GFDL/MOM6@5d6ff165f Merge branch 'dev/ncar' into add_melt_potential_mct
- NOAA-GFDL/MOM6@d0bc3bc2f Fix bug and make sure melt potential is always <= 0
- NOAA-GFDL/MOM6@c6b253400 Pass melt/freeze potential to coupler; reset melt_potential
- NOAA-GFDL/MOM6@eb2c69f1d Replace units (W/m^2 to J/m^2) in the comments
- NOAA-GFDL/MOM6@be0e7a844 Remove dt from extract_surface_state
- NOAA-GFDL/MOM6@12011dec9 Merge pull request #76 from gustavo-marques/merge-candidate-2018-07-16
- NOAA-GFDL/MOM6@05d6c805a Update melt_potential again, but values are still ~ 3 x smaller
- NOAA-GFDL/MOM6@0a55527b0 Merge branch 'dev/ncar' into merge-candidate-2018-07-16
- NOAA-GFDL/MOM6@7347ad973 Update calculation of melt_potential
- NOAA-GFDL/MOM6@4e5bf7494 Change calculation of melt_potential
- NOAA-GFDL/MOM6@60eb7ec30 Add comment about icefrq used in Hycom
- NOAA-GFDL/MOM6@d981745f8 Fix a call to ocn_export
- NOAA-GFDL/MOM6@b52db1ff5 Allocate/deallocate melt_potential
- NOAA-GFDL/MOM6@3cdd97bfa Add option to calculate melt potential
- NOAA-GFDL/MOM6@a840dc0f4 Pass melt potential (o2x_Fioo_q) via mct driver
- NOAA-GFDL/MOM6@4e41df988 Merge pull request #3 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@02d9be2f9 rm temporarily the noupc cap
- NOAA-GFDL/MOM6@04845d4e8 Merge pull request #74 from NCAR/dev/nuopc
- NOAA-GFDL/MOM6@25873994d rename mom_cap
- NOAA-GFDL/MOM6@353f60f07 Merge pull request #75 from NCAR/dev/nuopc_alper
- NOAA-GFDL/MOM6@0cdce0817 Merge branch 'dev-master-candidate-2018-07-16' into merge-candidate-2018-07-16
- NOAA-GFDL/MOM6@116fdfba4 rm trailing spaces
- NOAA-GFDL/MOM6@838de5293 improve mct cap doxumentation
- NOAA-GFDL/MOM6@290d4f5e4 add only keywords
- NOAA-GFDL/MOM6@ad1a2957d limit line widths to 120 chars
- NOAA-GFDL/MOM6@a2c6a7a2f improve tab width consistency
- NOAA-GFDL/MOM6@c2655b3ab fix call to shelf_calc_flux
- NOAA-GFDL/MOM6@8606be9df removed more trailing white space
- NOAA-GFDL/MOM6@d32333e07 fixed trailing white space
- NOAA-GFDL/MOM6@7fb01ffe9 removed trailing whitespace
- NOAA-GFDL/MOM6@f49c205eb more cleanup of cesm cap
- NOAA-GFDL/MOM6@450f87cbc more changes to get the nuopc cap working
- NOAA-GFDL/MOM6@403f59a8c changes needed to get nuopc cap restarting correctly
- NOAA-GFDL/MOM6@6f43605f9 removed use for shr_flds_dom_coord and shr_flds_dom_other by hardwiring names
- NOAA-GFDL/MOM6@2d89fa416 merged to head of dev/ncar
- NOAA-GFDL/MOM6@62dea759f updates for get nuopc working
- NOAA-GFDL/MOM6@bd90705ea Merge pull request #72 from gustavo-marques/update_KPP
- NOAA-GFDL/MOM6@ebceaece5 add horiz_varying_background scheme
- NOAA-GFDL/MOM6@48845179f check whether KD, KV and PRANDTL_BKGND are compatible
- NOAA-GFDL/MOM6@4b2bd2f13 Merge branch 'kpp_changes' into horiz_varying_background
- NOAA-GFDL/MOM6@1516d6a40 add safety checks for MOM_bkgnd_mixing schemes
- NOAA-GFDL/MOM6@7f67a4596 changes to get mom6 working correctly in nuopc mode and addition of debug output
- NOAA-GFDL/MOM6@c4f2a5e7f more updates
- NOAA-GFDL/MOM6@9e2578044 Merge branch 'dev/nuopc' of https://github.com/NCAR/MOM6 into dev/nuopc
- NOAA-GFDL/MOM6@50e4a654a additional changes to have mom cap nuopc working without a lot of diagnostic output
- NOAA-GFDL/MOM6@f3ca0c8df fixes to get mom cap working with cice
- NOAA-GFDL/MOM6@eef4bf2d4 Added global grid nx and ny scalars to MOM6 cap for writing history files
- NOAA-GFDL/MOM6@b7a88a6cc Merge branch 'mvertens/dev_nuopc' into dev/nuopc
- NOAA-GFDL/MOM6@4c1a97fc7 no longer need to scale by mask - since its done in MOM_surface_forcing
- NOAA-GFDL/MOM6@5f1b51c72 more cleanup of ocn_comp_mct
- NOAA-GFDL/MOM6@3d1962c01 changes to MOM6 to get nuopc and mct caps similar
- NOAA-GFDL/MOM6@b10f3434a last set of changes on the mct side to get mct and nuopc caps compatible
- NOAA-GFDL/MOM6@972293480 more updates to get nuopc and mct closer
- NOAA-GFDL/MOM6@f482863b3 more changes to bring in nuopc and mct caps closer together
- NOAA-GFDL/MOM6@8a230737d more udpates to make mct and mom caps similar
- NOAA-GFDL/MOM6@06565ec01 major refactor of mct interface - and addition -f MOM_ocean_model.F90 and MOM_surface_forcing.F90 to mct and nuopc cap codes
- NOAA-GFDL/MOM6@9fae628cd fixes for having mom6 work with nuopc-cmeps-v0.4
- NOAA-GFDL/MOM6@0a494857f Merge branch 'dev/ncar_nuopc' of https://github.com/mvertens/MOM6 into dev/nuopc
- NOAA-GFDL/MOM6@93d7a07bc changes to mom cap to be compatible with nuopcB_180413
- NOAA-GFDL/MOM6@fdc7962b5 updates for cesm-nuopc-cmeps-mom6-nems_cap configuration
- NOAA-GFDL/MOM6@d30900b26 update mom6 nuopc cap
- NOAA-GFDL/MOM6@2cfa6314a update mom_cap for cesm
- NOAA-GFDL/MOM6@5374582b3 update mom cap from NEMS
- NOAA-GFDL/MOM6@7bf531bf3 placed the GFDL MOM6 cap as a starting point in the new nuopc_driver/ directory
adcroft added a commit that referenced this issue Oct 12, 2018
@adcroft
Merge branch 'dev/master' into dev/gfdl
7da7cf3 
Merging in dev/master after PR from NCAR:

- NOAA-GFDL/MOM6@587c9b7ac Merge branch 'dev/master' into dev/gfdl
- NOAA-GFDL/MOM6@c4d6dd011 Merge pull request #857 from wrongkindofdoctor/user/jml/add_mol_wt_to_aof
- NOAA-GFDL/MOM6@c77ad425c Merge branch 'gustavo-marques-dev-ncar-candidate-2018-09-26' into dev/master
- NOAA-GFDL/MOM6@120562440 Merge pull request #858 from MFJansen/patch-1
- NOAA-GFDL/MOM6@7575e39e3 Swapped argument attribute order
- NOAA-GFDL/MOM6@76f80bc95 Removed trailing white space
- NOAA-GFDL/MOM6@940311546 Bug fix to compute Rd_dx whenever MEKE is used
- NOAA-GFDL/MOM6@c09a6611a Merge pull request #4 from alperaltuntas/bkgnd_mixing_fix
- NOAA-GFDL/MOM6@3666d609d read prandtl_bknd for all cases
- NOAA-GFDL/MOM6@ecefa4c7d added mol_wt dummy argument to atmos_ocean_fluxes in solo_driver
- NOAA-GFDL/MOM6@ab7040a0b Merge pull request #4 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@4306feb4b  end if to endif and end do to enddo
- NOAA-GFDL/MOM6@3714a3955 un-indent subroutines
- NOAA-GFDL/MOM6@caec6dd27 read prandtl_bkgnd only for cvmix or horiz_varying_background
- NOAA-GFDL/MOM6@f91944488 fix divide by error if Kd=0.0
- NOAA-GFDL/MOM6@67b041352 Merge pull request #4 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@2701b7a07 Merge pull request #854 from Hallberg-NOAA/correct_ice_shelf_grid
- NOAA-GFDL/MOM6@7effdd26b Merge pull request #3 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@bf44b18b5 Merge branch 'dev/master' into dev-ncar-candidate-2018-09-26
- NOAA-GFDL/MOM6@bcb195a83 Merge pull request #80 from gustavo-marques/pass_OBLD_caps
- NOAA-GFDL/MOM6@180e0ea12 (*)Correct the grid used for allocate_forcing_type
- NOAA-GFDL/MOM6@6f6f92a51 Change melt potential from time accumulated to instantaneous
- NOAA-GFDL/MOM6@9f0676e83 Copy Hml into sfc_state, so that caps can access it
- NOAA-GFDL/MOM6@6ccd94c73 Pass Hml, from ePBL or KPP, via a call to diabatic
- NOAA-GFDL/MOM6@e23fac158 Merge branch 'Hallberg-NOAA-fix_vertex_shearmix' into dev/gfdl
- NOAA-GFDL/MOM6@508bde943 Merge branch 'fix_vertex_shearmix' of https://github.com/Hallberg-NOAA/MOM6 into Hallberg-NOAA-fix_vertex_shearmix
- NOAA-GFDL/MOM6@9ede9b61a +(*)Corrected halo data when VERTEX_SHEAR=True
- NOAA-GFDL/MOM6@1cc8d7202 +Added optional halo_TS arg to set_diffusivity_init
- NOAA-GFDL/MOM6@fd6fb2e8b +Added an optional halo argument to geothermal
- NOAA-GFDL/MOM6@76a87b41d +Added an optional halo argument to make_frazil
- NOAA-GFDL/MOM6@405061779 Add OBLD into MCT cap
- NOAA-GFDL/MOM6@1ced255e0 Merge pull request #78 from gustavo-marques/update_melt_potential
- NOAA-GFDL/MOM6@d32386dc5 Allocates visc%MLD when hfreeze >= 0.0
- NOAA-GFDL/MOM6@ddccc44c9 Copy OBLD to visc%MLD when using KPP
- NOAA-GFDL/MOM6@d3d8215bd Add a new implementation for the melt potential calculation
- NOAA-GFDL/MOM6@f1445de5f Add option to use melt potential in mct and couple_driver
- NOAA-GFDL/MOM6@9c8b3c5da Comment DEBUG message
- NOAA-GFDL/MOM6@b0f123659 Merge pull request #2 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b7d83affc Merge pull request #73 from alperaltuntas/horiz_varying_background
- NOAA-GFDL/MOM6@4a7de48ad Merge pull request #77 from gustavo-marques/add_melt_potential_mct
- NOAA-GFDL/MOM6@5d6ff165f Merge branch 'dev/ncar' into add_melt_potential_mct
- NOAA-GFDL/MOM6@d0bc3bc2f Fix bug and make sure melt potential is always <= 0
- NOAA-GFDL/MOM6@c6b253400 Pass melt/freeze potential to coupler; reset melt_potential
- NOAA-GFDL/MOM6@eb2c69f1d Replace units (W/m^2 to J/m^2) in the comments
- NOAA-GFDL/MOM6@be0e7a844 Remove dt from extract_surface_state
- NOAA-GFDL/MOM6@12011dec9 Merge pull request #76 from gustavo-marques/merge-candidate-2018-07-16
- NOAA-GFDL/MOM6@05d6c805a Update melt_potential again, but values are still ~ 3 x smaller
- NOAA-GFDL/MOM6@0a55527b0 Merge branch 'dev/ncar' into merge-candidate-2018-07-16
- NOAA-GFDL/MOM6@7347ad973 Update calculation of melt_potential
- NOAA-GFDL/MOM6@4e5bf7494 Change calculation of melt_potential
- NOAA-GFDL/MOM6@60eb7ec30 Add comment about icefrq used in Hycom
- NOAA-GFDL/MOM6@d981745f8 Fix a call to ocn_export
- NOAA-GFDL/MOM6@b52db1ff5 Allocate/deallocate melt_potential
- NOAA-GFDL/MOM6@3cdd97bfa Add option to calculate melt potential
- NOAA-GFDL/MOM6@a840dc0f4 Pass melt potential (o2x_Fioo_q) via mct driver
- NOAA-GFDL/MOM6@4e41df988 Merge pull request #3 from NCAR/dev/ncar
- NOAA-GFDL/MOM6@02d9be2f9 rm temporarily the noupc cap
- NOAA-GFDL/MOM6@04845d4e8 Merge pull request #74 from NCAR/dev/nuopc
- NOAA-GFDL/MOM6@25873994d rename mom_cap
- NOAA-GFDL/MOM6@353f60f07 Merge pull request #75 from NCAR/dev/nuopc_alper
- NOAA-GFDL/MOM6@0cdce0817 Merge branch 'dev-master-candidate-2018-07-16' into merge-candidate-2018-07-16
- NOAA-GFDL/MOM6@116fdfba4 rm trailing spaces
- NOAA-GFDL/MOM6@838de5293 improve mct cap doxumentation
- NOAA-GFDL/MOM6@290d4f5e4 add only keywords
- NOAA-GFDL/MOM6@ad1a2957d limit line widths to 120 chars
- NOAA-GFDL/MOM6@a2c6a7a2f improve tab width consistency
- NOAA-GFDL/MOM6@c2655b3ab fix call to shelf_calc_flux
- NOAA-GFDL/MOM6@8606be9df removed more trailing white space
- NOAA-GFDL/MOM6@d32333e07 fixed trailing white space
- NOAA-GFDL/MOM6@7fb01ffe9 removed trailing whitespace
- NOAA-GFDL/MOM6@f49c205eb more cleanup of cesm cap
- NOAA-GFDL/MOM6@450f87cbc more changes to get the nuopc cap working
- NOAA-GFDL/MOM6@403f59a8c changes needed to get nuopc cap restarting correctly
- NOAA-GFDL/MOM6@6f43605f9 removed use for shr_flds_dom_coord and shr_flds_dom_other by hardwiring names
- NOAA-GFDL/MOM6@2d89fa416 merged to head of dev/ncar
- NOAA-GFDL/MOM6@62dea759f updates for get nuopc working
- NOAA-GFDL/MOM6@bd90705ea Merge pull request #72 from gustavo-marques/update_KPP
- NOAA-GFDL/MOM6@ebceaece5 add horiz_varying_background scheme
- NOAA-GFDL/MOM6@48845179f check whether KD, KV and PRANDTL_BKGND are compatible
- NOAA-GFDL/MOM6@4b2bd2f13 Merge branch 'kpp_changes' into horiz_varying_background
- NOAA-GFDL/MOM6@1516d6a40 add safety checks for MOM_bkgnd_mixing schemes
- NOAA-GFDL/MOM6@7f67a4596 changes to get mom6 working correctly in nuopc mode and addition of debug output
- NOAA-GFDL/MOM6@c4f2a5e7f more updates
- NOAA-GFDL/MOM6@9e2578044 Merge branch 'dev/nuopc' of https://github.com/NCAR/MOM6 into dev/nuopc
- NOAA-GFDL/MOM6@50e4a654a additional changes to have mom cap nuopc working without a lot of diagnostic output
- NOAA-GFDL/MOM6@f3ca0c8df fixes to get mom cap working with cice
- NOAA-GFDL/MOM6@eef4bf2d4 Added global grid nx and ny scalars to MOM6 cap for writing history files
- NOAA-GFDL/MOM6@b7a88a6cc Merge branch 'mvertens/dev_nuopc' into dev/nuopc
- NOAA-GFDL/MOM6@4c1a97fc7 no longer need to scale by mask - since its done in MOM_surface_forcing
- NOAA-GFDL/MOM6@5f1b51c72 more cleanup of ocn_comp_mct
- NOAA-GFDL/MOM6@3d1962c01 changes to MOM6 to get nuopc and mct caps similar
- NOAA-GFDL/MOM6@b10f3434a last set of changes on the mct side to get mct and nuopc caps compatible
- NOAA-GFDL/MOM6@972293480 more updates to get nuopc and mct closer
- NOAA-GFDL/MOM6@f482863b3 more changes to bring in nuopc and mct caps closer together
- NOAA-GFDL/MOM6@8a230737d more udpates to make mct and mom caps similar
- NOAA-GFDL/MOM6@06565ec01 major refactor of mct interface - and addition -f MOM_ocean_model.F90 and MOM_surface_forcing.F90 to mct and nuopc cap codes
- NOAA-GFDL/MOM6@9fae628cd fixes for having mom6 work with nuopc-cmeps-v0.4
- NOAA-GFDL/MOM6@0a494857f Merge branch 'dev/ncar_nuopc' of https://github.com/mvertens/MOM6 into dev/nuopc
- NOAA-GFDL/MOM6@93d7a07bc changes to mom cap to be compatible with nuopcB_180413
- NOAA-GFDL/MOM6@fdc7962b5 updates for cesm-nuopc-cmeps-mom6-nems_cap configuration
- NOAA-GFDL/MOM6@d30900b26 update mom6 nuopc cap
- NOAA-GFDL/MOM6@2cfa6314a update mom_cap for cesm
- NOAA-GFDL/MOM6@5374582b3 update mom cap from NEMS
- NOAA-GFDL/MOM6@7bf531bf3 placed the GFDL MOM6 cap as a starting point in the new nuopc_driver/ directory
adcroft added a commit that referenced this issue Dec 19, 2020
@adcroft
MOM6: Merge branch 'ocean-eddy-cpt-dev/cpt' into dev/gfdl
c9f7b84 
- Last merge added diagnostics

- NOAA-GFDL/MOM6@e43a8138b Merge branch 'ocean-eddy-cpt-dev/cpt' into dev/gfdl
- NOAA-GFDL/MOM6@5cdc0b720 Merge branch 'dev/gfdl' into dev/cpt
- NOAA-GFDL/MOM6@1f38235f4 Merge pull request #1272 from marshallward/ac_ncflag_update
- NOAA-GFDL/MOM6@7fc8a414d Merge branch 'dev/gfdl' into ac_ncflag_update
- NOAA-GFDL/MOM6@2507f7a7f Merge pull request #4 from ocean-eddy-cpt/update-mom6-nov-2020
- NOAA-GFDL/MOM6@446becc0e Merge pull request #1267 from Hallberg-NOAA/simplify_diabatic
- NOAA-GFDL/MOM6@008af9a35 Testing: Update FMS to 2020.04 ; .gitignore update
- NOAA-GFDL/MOM6@4e148cdda Merge branch 'dev/gfdl' into ac_ncflag_update
- NOAA-GFDL/MOM6@c8fa91d4f Autoconf: explicit netCDF directry flags
- NOAA-GFDL/MOM6@b9ae6f9e7 Merge branch 'dev/gfdl' into simplify_diabatic
- NOAA-GFDL/MOM6@b1e7c0216 Autoconf: safer netCDF flag support
- NOAA-GFDL/MOM6@788aeb070 Merge branch 'dev/gfdl' of https://github.com/NOAA-GFDL/MOM6 into update-mom6-nov-2020
- NOAA-GFDL/MOM6@1f42672b2 Eliminate unneeded variables in diabatic_driver
- NOAA-GFDL/MOM6@df77bd828 Merge remote-tracking branch 'origin/dev/gfdl' into dev/cpt
- NOAA-GFDL/MOM6@adf60469b Merge branch 'neerajabhamidipati-MOM6_neeraja' into dev/cpt
- NOAA-GFDL/MOM6@b73ee1198 Disable KE_BT diagnostic in unsplit mode
- NOAA-GFDL/MOM6@7e1a1c916 Fixes for code compliance
- NOAA-GFDL/MOM6@187ff0f78 Merge branch 'MOM6_neeraja' of https://github.com/neerajabhamidipati/MOM6 into neerajabhamidipati-MOM6_neeraja
- NOAA-GFDL/MOM6@1c3a20158 Correct dimensions of NoSt and ShSt diagnostics
- NOAA-GFDL/MOM6@44f64c057 Add NoSt and ShSt diagnostic to openmp directives
- NOAA-GFDL/MOM6@a1d28a294 Added a new diagnostic for barotropic contribution to KE term (KE_BT)
- NOAA-GFDL/MOM6@11ccaf76b Assigned u_BT_accel and v_BT_accel to accel_diag_ptrs
- NOAA-GFDL/MOM6@6c7eac1ed Copied u_BT_accel and v_BT_accel to the accelaration diagnostics pointer
- NOAA-GFDL/MOM6@bc78bbe71 Merge branch 'MOM6_neeraja' into dev/cpt
- NOAA-GFDL/MOM6@7c347e5ca Debugged the code to correct dimensions of pars(4) in angled_coast
- NOAA-GFDL/MOM6@26d4cf4f3 Changed conversion between s and T in the register step
- NOAA-GFDL/MOM6@3d3e582b1 Merge https://github.com/neerajabhamidipati/MOM6 into MOM6_neeraja
- NOAA-GFDL/MOM6@a62745761 Modified comments
- NOAA-GFDL/MOM6@e7c461da6 Edited comments
- NOAA-GFDL/MOM6@41539427d De-bugged the code to fix diagnostics for normal and shear stresses
- NOAA-GFDL/MOM6@197885420 Declare local variables NoSt and ShSt (normal stress and shear stress)
- NOAA-GFDL/MOM6@b62ad1b52 Added diagnostics for normal stress and shear stress
OlgaSergienko pushed a commit to OlgaSergienko/MOM6-examples that referenced this issue Dec 29, 2020
@neerajabhamidipati
Merge pull request NOAA-GFDL#4 from ocean-eddy-cpt/update-mom6-nov-2020
2507f7a 
Update CPT fork of MOM6 to latest (12/10/2020) from NOAA-GFDL
marshallward added a commit that referenced this issue Mar 26, 2021
@marshallward
MOM6: Merge pull request #1357 from marshallward/emc_update_20210322
efb7a27 
- NOAA-GFDL/MOM6@b92d763ec Merge pull request #1357 from marshallward/emc_update_20210322
- NOAA-GFDL/MOM6@8cc501820 Style: Line length fix in MCT_cap
- NOAA-GFDL/MOM6@a1206ede8 Merge branch 'dev/gfdl' into emc_update_20210322
- NOAA-GFDL/MOM6@4fd897da2 Merge pull request #1355 from marshallward/test_submod_update
- NOAA-GFDL/MOM6@b33b3af7f Testing: Recurse target submodules, LDFLAGS hook
- NOAA-GFDL/MOM6@3193ab081 Merge pull request #1338 from OlgaSergienko/ice_dynamics
- NOAA-GFDL/MOM6@edc15f61c Merge branch 'dev/gfdl' into ice_dynamics
- NOAA-GFDL/MOM6@b89152c41 Merge branch 'dev/emc' into feature/allowmaskchanges
- NOAA-GFDL/MOM6@e5a40353f Merge pull request #61 from jiandewang/feature/update-to-GFDL-20210308
- NOAA-GFDL/MOM6@8dd907275 Merge pull request #1346 from marshallward/fgnv_bound_fix
- NOAA-GFDL/MOM6@33d28f138 Merge branch 'dev/gfdl' into fgnv_bound_fix
- NOAA-GFDL/MOM6@a6f680cc2 Merge pull request #1351 from adcroft/units-for-slope
- NOAA-GFDL/MOM6@ab241b642 Merge branch 'dev/gfdl' into units-for-slope
- NOAA-GFDL/MOM6@4255adad0 Merge pull request #1344 from adcroft/cvmix-update
- NOAA-GFDL/MOM6@5839494ce Merge branch 'dev/gfdl' into ice_dynamics
- NOAA-GFDL/MOM6@b911a3928 Merge branch 'dev/gfdl' into cvmix-update
- NOAA-GFDL/MOM6@0d60fd026 Change units of slope returned from calc_isoneutral_slopes() to "Z L-1"
- NOAA-GFDL/MOM6@250f00700 Merge pull request #1350 from Hallberg-NOAA/set_io_domain
- NOAA-GFDL/MOM6@abc8fe463 Removed blocks of commented text and multiplications by 0
- NOAA-GFDL/MOM6@8494ba8d6 change logical from "topog_..." to "topo_..."
- NOAA-GFDL/MOM6@5b686c838 add parameter for allowing land mask changes
- NOAA-GFDL/MOM6@bb5eb2527 Explicitly set (1x1) io_domain as a default
- NOAA-GFDL/MOM6@b47e493d3 Removed blocks of commented code. Added parentheses in calc_shelf_visc
- NOAA-GFDL/MOM6@3703ca7dd Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20210308 this is corresponding to GFDL 20210308 main branch commit (hash # a4049e7)
- NOAA-GFDL/MOM6@a4049e784 Merge branch 'dev/gfdl' into main
- NOAA-GFDL/MOM6@651b4673f Bugfix: FGNV streamfunction vertical bounds
- NOAA-GFDL/MOM6@00cb11ce5 Merge pull request #56 from jiandewang/feature/update-to-GFDL-20210224
- NOAA-GFDL/MOM6@43dadc16a Defined variables in ice_shelf_solve_outer
- NOAA-GFDL/MOM6@aed4f0ee7 More style errors
- NOAA-GFDL/MOM6@2232fa288 corrected style errors in MOM_ice_shelf.F90; MOM_ice_shelf_dynamics.F90; MOM_ice_shelf_initialize.F90
- NOAA-GFDL/MOM6@9aa75c869 Modified MOM_ice_shelf_initialize.F90
- NOAA-GFDL/MOM6@5483bfed1 Cleaned initialize_ice_shelf_boundary_channel
- NOAA-GFDL/MOM6@e56d45335 Update CVMix to v0.98-beta
- NOAA-GFDL/MOM6@34dc0c848 Update CVMix to v0.94b-beta with API change
- NOAA-GFDL/MOM6@28b1ac922 Update CVMix to v0.93-beta (no API change)
- NOAA-GFDL/MOM6@a729a7fb4 Merge commit '00c2819457ab6d2497c871ce9a02d5e67e7f741c' into feature/update-to-GFDL-20210224 this is corresponding to GFDL 20210224 main branch commit (hash # 00c2819)
- NOAA-GFDL/MOM6@32cfe35a4 modified MOM_ice_shelf_initialize for testing with viscosity from a file
- NOAA-GFDL/MOM6@fdd83e658 dynamic ice shelf with non-linear viscosity and evolving ice thickness due to sub-ice-shelf melting
- NOAA-GFDL/MOM6@271bfce94 corrected boundary mask in init_boundary_channel and updated u_ and v_bdry_val through halo
- NOAA-GFDL/MOM6@89f4386eb corrected initialize_boundary_channel call
- NOAA-GFDL/MOM6@f0ae41c0c modified viscosity computations
- NOAA-GFDL/MOM6@cdc7690f4 Merge pull request #54 from DeniseWorthen/feature/optmesh
- NOAA-GFDL/MOM6@775205208 fixed ice-shelf advection
- NOAA-GFDL/MOM6@f30f636b2 corrected indecises in computation of driving stresses
- NOAA-GFDL/MOM6@a34ebb141 remove tempory bypass of mesh abort code
- NOAA-GFDL/MOM6@12b389520 Merge branch 'dev/emc' into feature/optmesh
- NOAA-GFDL/MOM6@13a5a2e0f comment out mask check which fails for mx100
- NOAA-GFDL/MOM6@7db2cc7a4 make mom mesh optional
- NOAA-GFDL/MOM6@d531a324a Merge pull request #51 from jiandewang/feature/update-to-GFDL-20210120
- NOAA-GFDL/MOM6@faeb13972 Merge pull request #1 from DeniseWorthen/bugfix/li2016fix
- NOAA-GFDL/MOM6@e7d0976de Fixes latent heat from fprec and frunoff
- NOAA-GFDL/MOM6@66ec49b2e Merge remote-tracking branch 'JiandeWang/feature/update-to-GFDL-20210120' into bugfix/li2016fix
- NOAA-GFDL/MOM6@e928fe22a Merge branch 'dev/emc' into bugfix/li2016fix
- NOAA-GFDL/MOM6@b544dad71 Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@d63c2de85 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20210120 This is corresponding GFDL 20210120 main branch commit (hash # fe5e605)
- NOAA-GFDL/MOM6@cec1ad3b2 Merge pull request #49 from breichl/user/bgr/Tau_halo_updates_in_nupoc
- NOAA-GFDL/MOM6@91282c106 add brandon's halo update fix for LI_2016
- NOAA-GFDL/MOM6@29d768065 Add two halo updates for taux and tauy in mom_surface_forcing_nupoc - In A and B grid configuration halos were never updated after taux/tauy were populated. - This propogated through to the ustar_gustless field, hence caused a restart issue when using ustar_gustless in parameterizations. - This appears to correct the restart issue by updating the halos at the end of the A and B grid taux/tauy loops.
- NOAA-GFDL/MOM6@69b2a2354 Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@ebac0adb8 Modifications to register_diag_field in MOM_ice_shelf_dynamics to make ice-shelf_fields consistent with diag_table Modifications to MOM_ice_shelf.F90 to apply melting to the case of a dynamic ice shelf.
- NOAA-GFDL/MOM6@d27bcbdba Matt's changes to drivers Merge branch 'revert_drivers' of https://github.com/MJHarrison-GFDL/MOM6 into matts-revert-drivers
- NOAA-GFDL/MOM6@39dd3e322 Modified MOM_ice_shelf_dynamics.F90
- NOAA-GFDL/MOM6@f1041d1f9 Fixed bugs in CG_action, matrix_diagonal and calc_shelf_visc in MOM_ice_shelf_dynamics.F90  modified initialize_ice_shelf_boundary_channel in MOM_ice_shelf_initialze.F90
- NOAA-GFDL/MOM6@a98f7db5e Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@f3bb72834 Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@16ade2fe8 Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@bfbd95aac white space changes
- NOAA-GFDL/MOM6@6164f63a9 manual add of dev/emc changes (statediagnose)
- NOAA-GFDL/MOM6@4e51baea1 Revert "Merge remote-tracking branch 'upstream/dev/emc' into dev/emc"
- NOAA-GFDL/MOM6@e4ca1dcb0 Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@40bfb4bfe Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@6371e4892 Merge remote-tracking branch 'upstream/dev/emc' into dev/emc
- NOAA-GFDL/MOM6@58a69fcb6 Merge pull request #10 from NOAA-EMC/dev/emc
- NOAA-GFDL/MOM6@d53791175 Merge pull request #9 from NOAA-EMC/dev/emc
- NOAA-GFDL/MOM6@1be1217b2 Merge pull request #7 from NOAA-EMC/dev/emc
- NOAA-GFDL/MOM6@59270484c Merge pull request #6 from NOAA-EMC/dev/emc
- NOAA-GFDL/MOM6@fb02b3a4b Merge pull request #5 from NOAA-EMC/dev/emc
- NOAA-GFDL/MOM6@74f8d112c Merge pull request #4 from NOAA-EMC/dev/emc
- NOAA-GFDL/MOM6@2b7abecdc Merge pull request #2 from NOAA-EMC/dev/emc
marshallward added a commit that referenced this issue Apr 14, 2021
@marshallward
MOM6: Merge pull request #1370 from Hallberg-NOAA/F_case_file_output
6354d81 
- NOAA-GFDL/MOM6@fc75e0fa4 Merge pull request #1370 from Hallberg-NOAA/F_case_file_output
- NOAA-GFDL/MOM6@e8e8abab9 Merge remote-tracking branch 'hallberg/F_case_file_output' into F_case_file_output
- NOAA-GFDL/MOM6@96f1d1e89 Use allocatable types in write_ocean_geometry_files
- NOAA-GFDL/MOM6@983824a69 Merge branch 'dev/gfdl' into F_case_file_output
- NOAA-GFDL/MOM6@5fe51b18e Merge pull request #1369 from Hallberg-NOAA/SIS2_IO_upgrades
- NOAA-GFDL/MOM6@0eb47b25a +More consistent treatment of input_filename = 'F'
- NOAA-GFDL/MOM6@03b997b88 +Enhanced support for novel axes in MOM_io
- NOAA-GFDL/MOM6@7ec08cd9b Merge pull request #1365 from marshallward/corad_vec_v2
- NOAA-GFDL/MOM6@dc66dd8a7 Merge branch 'dev/gfdl' into corad_vec_v2
- NOAA-GFDL/MOM6@c5c74419d Merge pull request #1364 from jkrasting/downsampled_diag_fix
- NOAA-GFDL/MOM6@a5fb36503 Merge branch 'dev/gfdl' into downsampled_diag_fix
- NOAA-GFDL/MOM6@d485a5123 Merge pull request #1363 from Hallberg-NOAA/SIS2_infra_support
- NOAA-GFDL/MOM6@b413f25c5 Merge branch 'SIS2_infra_support' of github.com:Hallberg-NOAA/MOM6 into SIS2_infra_support
- NOAA-GFDL/MOM6@358da7cc4 Corrected comments describing CT_copy_data
- NOAA-GFDL/MOM6@ad0bc3c41 Merge branch 'dev/gfdl' into SIS2_infra_support
- NOAA-GFDL/MOM6@fae570d0a Merge branch 'main' into main_to_gfdl
- NOAA-GFDL/MOM6@5f063044c Fixed downsampling summation for more diag types
- NOAA-GFDL/MOM6@c549ae9d9 Merge pull request #1358 from NOAA-GFDL/dev-gfdl-main-candidate-2021-03-26
- NOAA-GFDL/MOM6@ad372fdc2 Merge branch 'dev/gfdl' into SIS2_infra_support
- NOAA-GFDL/MOM6@d1dc6b5ba Coriolis: Improved coradcalc vectorization
- NOAA-GFDL/MOM6@2b6d3e115 Merge pull request #1362 from marshallward/horvisc_diag_to_stack
- NOAA-GFDL/MOM6@9792b2346 Fixed downsampling for x:sum y:point z:point diags
- NOAA-GFDL/MOM6@665cd9a3b Merge branch 'dev/gfdl' into horvisc_diag_to_stack
- NOAA-GFDL/MOM6@b6c7fdb02 change default value of use_mommesh as true
- NOAA-GFDL/MOM6@6d4a48390 Merge pull request #1360 from Hallberg-NOAA/fewer_timelevels
- NOAA-GFDL/MOM6@3c1cb2efd +Add MOM_domains interfaces needed by SIS2
- NOAA-GFDL/MOM6@cfa59aab1 +Add coupler_types interfaces needed by SIS2
- NOAA-GFDL/MOM6@97f111779 Merge branch 'dev/gfdl' into fewer_timelevels
- NOAA-GFDL/MOM6@813fc7975 Merge pull request #1359 from Hallberg-NOAA/FMS2_io_writes
- NOAA-GFDL/MOM6@2ffea27be MOM_hor_visc: Variables moved to stack
- NOAA-GFDL/MOM6@4fd380747 Merge branch 'dev/gfdl' into FMS2_io_writes
- NOAA-GFDL/MOM6@c62d51f9d Remove inappropriate timelevel arguments
- NOAA-GFDL/MOM6@13f1e70f5 Merge pull request #1356 from GEOS-ESM/bugfix/sanAkel/output-b-grid-currents
- NOAA-GFDL/MOM6@6c2b944e2 Merge branch 'dev/gfdl' into bugfix/sanAkel/output-b-grid-currents
- NOAA-GFDL/MOM6@67b03e324 Merge pull request #1353 from Hallberg-NOAA/less_checksums
- NOAA-GFDL/MOM6@5669d4360 Merge branch 'dev/gfdl' into less_checksums
- NOAA-GFDL/MOM6@b044be8ee Merge branch 'dev/gfdl' into FMS2_io_writes
- NOAA-GFDL/MOM6@fe9b2a106 Merge pull request #1352 from Hallberg-NOAA/FMS2_io
- NOAA-GFDL/MOM6@f6105cb22 Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@95ad9372b Fix distributed reads of checksums using FMS2_io
- NOAA-GFDL/MOM6@81c48cbf6 Merge pull request #5 from marshallward/FMS2_io_writes
- NOAA-GFDL/MOM6@ba643bde2 Explicit domain decomposition of horizontal axes
- NOAA-GFDL/MOM6@7bdecbc62 Add missing ".nc" to FMS2 output filenames
- NOAA-GFDL/MOM6@fad7e0d4a Merge branch 'dev/gfdl' into bugfix/sanAkel/output-b-grid-currents
- NOAA-GFDL/MOM6@17afc2b5e A call to pass_vector(...) is needed to correctly do a halo exchange before getting currents in A- or B-grid staggering. Now added.
- NOAA-GFDL/MOM6@3fe07d4c6 +Move FMS2 read helper routines into MOM_io_infra
- NOAA-GFDL/MOM6@2579d0771 Merge pull request #4 from gustavo-marques/less_checksums_mct_nuopc
- NOAA-GFDL/MOM6@66ac81057 Only write checksums from root PE MCT/NUOPC caps
- NOAA-GFDL/MOM6@84d5e2176 +FMS2 reads for ints & MOM_read_data_fms2 cleanup
- NOAA-GFDL/MOM6@4843c6c4d Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@03e174e14 Removed FMS2 MOM_axis and MOM_write_field_fms2
- NOAA-GFDL/MOM6@255233ba3 Added code to write via FMS2 interfaces
- NOAA-GFDL/MOM6@0fdc5c438 Correct warnings from categorize_axis
- NOAA-GFDL/MOM6@f89ddeaa8 +Add edge_axis argument to write_metadata_axis
- NOAA-GFDL/MOM6@ee0152f26 +Separate MOM_interp_infra axistype from MOM_io
- NOAA-GFDL/MOM6@09173f7dc Only write checksums from root PE for FMS_cap
- NOAA-GFDL/MOM6@30b057116 Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@91232095d Merge branch 'dev/gfdl' into FMS2_io
- NOAA-GFDL/MOM6@aab2ad645 +Add ability to read fields via FMS2 interfaces
- NOAA-GFDL/MOM6@23a78d2f6 Clean up in MOM_restart.F90
- NOAA-GFDL/MOM6@c68fedfea +Change arguments to MOM_register_variable_axes
- NOAA-GFDL/MOM6@0ba1aa53e +Simplified read_data_fms2 and write_field_fms2
- NOAA-GFDL/MOM6@f2459ec21 Merge branch 'user/jml/add_fms2io_to_MOM_restart' of https://github.com/wrongkindofdoctor/MOM6 into FMS2_io
- NOAA-GFDL/MOM6@a07757314 Explicitly set (1x1) io_domain as a default
- NOAA-GFDL/MOM6@d4531ca37 Duplicated infra/FMS1 into infra/FMS2
- NOAA-GFDL/MOM6@f806579bc Correct module use statements in infra/FMS1
- NOAA-GFDL/MOM6@2e46ea6d7 removed errant .true. in save_restart call
- NOAA-GFDL/MOM6@809b3ac52 added local logical variables to save restart wrapper that are set using the use_fms2 and write_ic flags if present to avoid invalid memory reference error added str_len argument to register_variable_attribute calls
- NOAA-GFDL/MOM6@a74c7eaba changed FMS release to 2020.03-beta1
- NOAA-GFDL/MOM6@5c2daa5da converted save_restart and restore_state to interface that call versions of the routines with the fms-io or fms2-io interfaces added module use statments for fms2_io and MOM_io helper routines to MOM_restart added use_fms2=.true. arguments to save_restart and restore_state calls added write_ic=.true. to the save_restart call in MOM.F90
- NOAA-GFDL/MOM6@40047fa50 Merge pull request #66 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@c8695c621 Merge pull request #65 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@0cf3cb9c9 Merge pull request #64 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@de7f95a57 Merge pull request #63 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@50c353935 Merge pull request #62 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@cbdcf8a52 Create hola_tierra.yml
- NOAA-GFDL/MOM6@763b17650 Merge pull request #61 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@ff3412651 Merge pull request #60 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@cea55fec4 Merge pull request #59 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b8eee455f Merge branch 'dev/gfdl' of github.com:NOAA-GFDL/MOM6 into dev/gfdl
- NOAA-GFDL/MOM6@46b8f0fd5 Merge pull request #58 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@ff1a27f59 Merge pull request #57 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@496617cb1 Merge pull request #56 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@e9281f40e Merge pull request #55 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@4a5613400 Merge pull request #54 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@86c2a7dfa Merge pull request #53 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@c24535733 Merge pull request #52 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@8d7be6866 Merge pull request #51 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@7adcc9037 Merge pull request #50 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@aff2a13ab Merge pull request #49 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@477d9f85d Merge pull request #48 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@cee0a2166 Merge pull request #47 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@12dccaf8a Merge pull request #46 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@7dbca83ff Merge pull request #44 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@162ca970b Merge pull request #43 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@abaf004cb Merge pull request #42 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@075ab81e5 Merge pull request #41 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@e072bc7cc Merge in latest dev/gfdl updates (#40)
- NOAA-GFDL/MOM6@cae4cfd05 Merge branch 'dev/gfdl' of github.com:wrongkindofdoctor/MOM6 into dev/gfdl
- NOAA-GFDL/MOM6@ece60c11e Merge branch 'NOAA-GFDL-dev/gfdl' into dev/gfdl
- NOAA-GFDL/MOM6@3e27e4793 Merge branch 'dev/gfdl' of git://github.com/NOAA-GFDL/MOM6 into NOAA-GFDL-dev/gfdl
- NOAA-GFDL/MOM6@59109032e Merge pull request #38 from wrongkindofdoctor/revert-37-dev/gfdl
- NOAA-GFDL/MOM6@3c15a0c11 Revert "Merge in dev/gfdl updates (#37)"
- NOAA-GFDL/MOM6@855d7069d Merge in dev/gfdl updates (#37)
- NOAA-GFDL/MOM6@2c32568b7 merge in latest dev/gfdl updates (#36)
- NOAA-GFDL/MOM6@09bcebcfe Merge pull request #35 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@124a071e4 Merge pull request #33 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a427676bd Merge pull request #32 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@0b874f32c Merge pull request #31 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a5386da98 Merge pull request #30 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@5b2852cde Merge pull request #28 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@22c586562 Merge pull request #27 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@f9b5a7fca Merge pull request #26 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@577208343 Merge pull request #25 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@5589d8cc3 Merge pull request #24 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@aa11e1f66 Merge pull request #23 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b5e5c48a6 Merge pull request #22 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@911d0a240 Merge pull request #21 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@601eb679c Merge pull request #20 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b4fd53be9 Merge pull request #19 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@f6879f425 Merge pull request #18 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@139ab1fc0 Merge pull request #17 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a0c80dcf3 Merge pull request #16 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@42cca4f46 Merge pull request #15 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@a1c556b7f Merge pull request #14 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@f5bc54b67 Merge pull request #13 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@6ffc8976f Merge pull request #12 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@30d35a3c6 Merge pull request #11 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@1304880fb Merge pull request #10 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@522069b31 Merge pull request #9 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@1bbc8de13 Merge pull request #8 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@9aa2aaeb1 Merge pull request #7 from NOAA-GFDL/dev/gfdl
- NOAA-GFDL/MOM6@b7f50fcbf Merge remote-tracking branch 'GFDL_MOM6/dev/gfdl' into dev/gfdl merge in latest MOM updates * GFDL_MOM6/dev/gfdl: (220 commits)   Update cache dir for /lustre/f2   Update cache dir for /lustre/f2   Calculate height-related diagnostics in Z   Set coord_adapt and coord_slight parameters in H   Corrected comments in build_zlike_column   +Pass max_depth to initialize_regridding in Z   Corrected comments in build_sigma_column   Combined scaling factors in build_adapt_column   Clarified comments in Idealized_Hurricane   +Recast MOM_diag_to_Z to work in units of Z   +Recast MOM_ALE_sponge to work in units of Z   +Added m_to_Z arg to horiz_interp_and_extrap_tracer   Find energetic_PBL column height changes in Z   +Find diapyc_energy_req column height changes in Z   Use local variables to rescale in MOM_Point_Accel   Recast MOM_sum_output to work in units of Z   Simplify MOM_diagnostics code   +Rescale depth inside of MEKE_lengthScales_0d   +Add conversion argument to register_static_field   Rescale values reported by PointAccel   ...
- NOAA-GFDL/MOM6@975262dc9 Merge pull request #5 from NOAA-GFDL/dev/gfdl
Hallberg-NOAA added a commit that referenced this issue Jun 8, 2021
@Hallberg-NOAA
Update MOM_parameter_doc files after MOM6 PR #1413
ae27c86 
  Updated the MOM_parameter_doc files to reflect the fact that VISBECK_MAX_SLOPE
is not being recorded in some cases where its value is not used as a result of
MOM6 PR #1413.  Also updated the parameter doc files for several of the test
cases that are not routinely run in the pipeline testing.  Updated the versions
of MOM6 and SIS2 that are pointed to the versions right after MOM6 PR #1413 was
merged into dev/gfdl and SIS2 PR #147 was merged into its dev/gfdl.  No
solutions change as the result of the updated versions of MOM6 and SIS2.

  The non-merge MOM6 commits in this update include:
- NOAA-GFDL/MOM6@da287e1a7 Merge pull request #1413 from marshallward/valgrind_fixes
- NOAA-GFDL/MOM6@a6a799928 Merge pull request #1412 from ESMG/ESMG_sponge_masking
- NOAA-GFDL/MOM6@d9edec107 Update MOM_internal_tide_input.F90
- NOAA-GFDL/MOM6@121ec5c47 Merge pull request #1411 from Hallberg-NOAA/rescale_user_OBC_code
- NOAA-GFDL/MOM6@616413a58 Memory management cleanup and initialization fixes
- NOAA-GFDL/MOM6@b583c00d8 Change to masking of u,v sponges.
- NOAA-GFDL/MOM6@627ae3f5d Tiny cleaning up edits.
- NOAA-GFDL/MOM6@29061de6a +Dimensional rescaling of user OBC test cases

  The SIS2 commits in this update include:
- NOAA-GFDL/SIS2@11934c6 Merge pull request #147 from ESMG/dev/esmg
- ESMG/SIS2@a4cdaf0 Take guts back out of a routine.
- ESMG/SIS2@2acd393 Merge branch 'n_aero' into dev/esmg
- ESMG/SIS2@16e1b4b Don't need the guts of icepack_query_tracer_sizes
- ESMG/SIS2@87bca6f Guts of things copied over from Icepack.
- ESMG/SIS2@4ea2d75 Working version of icepack_tracers.F90
- ESMG/SIS2@e525f5b Integer n_aero, n_iso.
- ESMG/SIS2@27c6f8a Merge pull request #5 from MJHarrison-GFDL/n_iso_to_int
- ESMG/SIS2@f4c1aa3 Changes parameter n_iso and n_aero type to integer
- ESMG/SIS2@079c7b1 Merge pull request #4 from MJHarrison-GFDL/ice_ridging_interfaces
- ESMG/SIS2@54f9039 additional Icepack interfaces
- ESMG/SIS2@77b49be Merge remote-tracking branch 'gfdl/dev/gfdl' into dev/esmg
- ESMG/SIS2@9aa2b52 Clean out some trailing whitespace.
- ESMG/SIS2@12432e3 Merge remote-tracking branch 'matt/Icepack' into dev/esmg
- ESMG/SIS2@184036d Call compress ice after ice_ridging to clean up any residual part size excess
- ESMG/SIS2@b662f69 Merge pull request #1 from MJHarrison-GFDL/Icepack
- ESMG/SIS2@b528a23 Re-normalized ice coverage after call to ridge_ice
- ESMG/SIS2@4d0d910 Modifications to enable Icepack APIs for ridging.
Hallberg-NOAA added a commit that referenced this issue Nov 22, 2021
@Hallberg-NOAA
MOM6 & SIS2: Merge in recent minor updates
d14218c 
  This commit updates the versions of SIS2 and MOM6 that MOM6-examples points
to, and it updates MOM_parameter_doc files to reflect a wording correction in a
runtime parameter from herrwang0:hor_visc_typos. This commit also includes some
updates to the MOM_parameter_doc.all files for some less commonly exercised test
cases that had been overlooked in another recent update.  All answers are
bitwise identical.

  Submodule updates in this PR include:

- NOAA-GFDL/SIS2@55032ff MOM EOS pointer API update
- NOAA-GFDL/SIS2@e3b5574 Merge pull request #156 from Hallberg-NOAA/fix_set_massless_tracer_arg
- NOAA-GFDL/SIS2@297ff46 +Change opt. arg. to set_massless_SIS_tracers

- NOAA-GFDL/MOM6@7b96ac1e2 Merge pull request #4 from herrwang0/hor_visc_typos
- NOAA-GFDL/MOM6@844c4c7c7 Merge branch 'dev/gfdl' into hor_visc_typos
- NOAA-GFDL/MOM6@e2e57872c Corrected the units of 124 variables
- NOAA-GFDL/MOM6@26b1d967d Correct a couple of typos in hor_visc
- NOAA-GFDL/MOM6@d7b2e3236 Disable clock sync of in-loop BML timers
- NOAA-GFDL/MOM6@934137619 Removed Travis-CI badge from README
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@adcroft @nikizadehgfdl @jkrasting