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Two files that fail extracting NoHit regex #140

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Mar 15, 2020
Merged

Two files that fail extracting NoHit regex #140

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cac6d97
Two file that fail extracting NoHit regex
Mar 11, 2020
41ac9de
Better names, moved into v0.14.0 folder
Mar 11, 2020
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32 changes: 32 additions & 0 deletions data/modules/fastq_screen/v0.14.0/scRNAseq_HISAT_example1_screen.txt
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Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
#Fastq_screen version: 0.14.0 #Aligner: bowtie2 #Reads in subset: 100000
Genome #Reads_processed #Unmapped %Unmapped #One_hit_one_genome %One_hit_one_genome #Multiple_hits_one_genome %Multiple_hits_one_genome #One_hit_multiple_genomes %One_hit_multiple_genomes Multiple_hits_multiple_genomes %Multiple_hits_multiple_genomes
Cat 23 21 91.30 0 0.00 0 0.00 1 4.35 1 4.35
Chicken 23 22 95.65 0 0.00 0 0.00 0 0.00 1 4.35
Cow 23 21 91.30 0 0.00 0 0.00 1 4.35 1 4.35
Drosophila 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Human 23 20 86.95 0 0.00 0 0.00 1 4.35 2 8.70
Mouse 23 0 0.00 5 21.74 4 17.39 4 17.39 10 43.48
Opossum 23 21 91.30 0 0.00 0 0.00 1 4.35 1 4.35
Pig 23 20 86.95 0 0.00 0 0.00 2 8.70 1 4.35
Rat 23 10 43.48 0 0.00 0 0.00 6 26.09 7 30.43
Zebrafish 23 22 95.65 0 0.00 0 0.00 0 0.00 1 4.35
Arabidopsis 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Grape 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Potato 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Tomato 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Adapters 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Brachybacterium 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Pseudomonas 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Massilia_oculi 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Ecoli 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Lambda 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
MT 23 22 95.65 0 0.00 0 0.00 1 4.35 0 0.00
PhiX 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
rRNA 23 22 95.65 0 0.00 0 0.00 0 0.00 1 4.35
Wasp 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Vectors 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Worm 23 22 95.65 0 0.00 0 0.00 0 0.00 1 4.35
Yeast 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Mycoplasma 23 23 100.00 0 0.00 0 0.00 0 0.00 0 0.00

%Hit_no_genomes: 0.00
32 changes: 32 additions & 0 deletions data/modules/fastq_screen/v0.14.0/scRNAseq_HISAT_example2_screen.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
#Fastq_screen version: 0.14.0 #Aligner: bowtie2 #Reads in subset: 100000
Genome #Reads_processed #Unmapped %Unmapped #One_hit_one_genome %One_hit_one_genome #Multiple_hits_one_genome %Multiple_hits_one_genome #One_hit_multiple_genomes %One_hit_multiple_genomes Multiple_hits_multiple_genomes %Multiple_hits_multiple_genomes
Cat 154 133 86.37 0 0.00 0 0.00 12 7.79 9 5.84
Chicken 154 141 91.56 0 0.00 0 0.00 0 0.00 13 8.44
Cow 154 131 85.06 0 0.00 0 0.00 7 4.55 16 10.39
Drosophila 154 148 96.10 0 0.00 0 0.00 0 0.00 6 3.90
Human 154 126 81.82 0 0.00 0 0.00 10 6.49 18 11.69
Mouse 154 1 0.65 43 27.92 16 10.39 34 22.08 60 38.96
Opossum 154 138 89.61 0 0.00 0 0.00 3 1.95 13 8.44
Pig 154 132 85.72 0 0.00 0 0.00 9 5.84 13 8.44
Rat 154 73 47.40 0 0.00 0 0.00 35 22.73 46 29.87
Zebrafish 154 142 92.21 0 0.00 0 0.00 2 1.30 10 6.49
Arabidopsis 154 146 94.81 0 0.00 0 0.00 0 0.00 8 5.19
Grape 154 147 95.45 0 0.00 0 0.00 1 0.65 6 3.90
Potato 154 146 94.81 0 0.00 0 0.00 0 0.00 8 5.19
Tomato 154 146 94.81 0 0.00 0 0.00 0 0.00 8 5.19
Adapters 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Brachybacterium 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Pseudomonas 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Massilia_oculi 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Ecoli 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
Lambda 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
MT 154 141 91.56 0 0.00 0 0.00 11 7.14 2 1.30
PhiX 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00
rRNA 154 148 96.10 0 0.00 0 0.00 2 1.30 4 2.60
Wasp 154 148 96.10 0 0.00 0 0.00 1 0.65 5 3.25
Vectors 154 148 96.10 0 0.00 0 0.00 0 0.00 6 3.90
Worm 154 147 95.45 0 0.00 0 0.00 0 0.00 7 4.55
Yeast 154 147 95.45 0 0.00 0 0.00 0 0.00 7 4.55
Mycoplasma 154 154 100.00 0 0.00 0 0.00 0 0.00 0 0.00

%Hit_no_genomes: 0.00