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fix peptide ideal chi torsion angles #32

Merged
merged 1 commit into from
Sep 29, 2023
Merged

fix peptide ideal chi torsion angles #32

merged 1 commit into from
Sep 29, 2023

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keitaroyam
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@keitaroyam keitaroyam commented Sep 25, 2023

Some strange ideal values in chi* torsion angles in the library were found and Acedrg was fixed. Here only 20 amino acids have been updated. I think chi* ideal value changes happened only in HIS/LEU/PHE/SER/TRP/TYR/MET.

Note that nucleus distances have also been updated to use the CSD-2021 values.

Other amino acids occasionally have chi* angles and at least AR3's chi2 has a strange ideal value. Perhaps those changes will be added here. For now I made a PR so that anyone can test this.

A concern is that there are some relatively large changes particularly in bond angle sigmas (1.5 to 3.0 degrees for example). It would have some impact.

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@GaribMurshudov GaribMurshudov left a comment

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Differences seem to be small. But some of the sigmas, especially on H atoms are different. We will need to sort this out in the next version

@keitaroyam keitaroyam merged commit 9deb310 into master Sep 29, 2023
@keitaroyam keitaroyam deleted the fix-pept-chi branch September 29, 2023 09:15
@keitaroyam keitaroyam mentioned this pull request Feb 16, 2024
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2 participants